Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01277 ATGTTTACAACTAACACCTCTTCCAATTCACACCCCATTTCCTCAAAACCTTCATCTTCCATTGAAGGCTCTCATGAGATGTCAGTATGCAACGAGGAGATGCGTCTAGCGGCGAGTTGCCCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCAGTGTATAGGGGTGTGAGGAAGAGGAACAATGATAAATGGGTGTGTGAAATTAGGGAGCCTAACAAGAAGACTAAGATTTGGCTAGGTACTTTTCCAACTGCCGAGATGGCAGCTCGAGCCCACGATGTTGCTGCAATGGCATTGAGGGGCCGCTACGCCTGTCTCAACTTTGCAGACTCTGTATGGAAGCTCCCTAAACCTGCCACCACTCAAACAAAAGATATACAAAAGGCTGCTGCACAGGCTGCTGAGGCTTTCAGACCAGACCAAAATTTATTGACTAGTGATGTTGACACGGCTAAAGTTGCCGCCACTGAGGAAGAGCAAAGCATGCTTTGTATGGAAGAGGAGGAAGAGGGGGTGATGAACATGCCTGAGTTATGGAGGAATATGGCGCTAATGTCCCCTACACATAGCTTTGGGTATCAAGAGTATGAAGATATGGATGTGGAAGACTTTGAAGATGAAGAGGTATCACTATGGAATTTTTAA 660 0.4697 MFTTNTSSNSHPISSKPSSSIEGSHEMSVCNEEMRLAASCPKKRAGRKKFKETRHPVYRGVRKRNNDKWVCEIREPNKKTKIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWKLPKPATTQTKDIQKAAAQAAEAFRPDQNLLTSDVDTAKVAATEEEQSMLCMEEEEEGVMNMPELWRNMALMSPTHSFGYQEYEDMDVEDFEDEEVSLWNF 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01277 219 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Trre11g01277 219 MobiDBLite consensus disorder prediction 1 26 - -
Trre11g01277 219 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Trre11g01277 219 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Trre11g01277 219 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Trre11g01277 219 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 218 IPR045277 GO:0003700
Trre11g01277 219 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Trre11g01277 219 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Trre11g01277 219 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Trre11g01277 219 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Trre11g01277 219 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01277 Trre-Chr11 12436689 12437348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01277 35 219 AP2-EREBP Transcription Factor Family AT4G25470 55.897 2.46e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre11g01277 AP2 5.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01277 - K09286 mtr:25497250 262.307