Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01276 ATGGTTTTCACTAGCAACAACTCTTCTTTTTCATACACAATTTCATCTAAAGATTCTTCTTTCTTCGCCACATCAACACTTGATTCTGAGCACCGGTTAGCGGCGAGCTGTCCTAAGAAGCGTGCAGGGCGGAAGATATTCAAGGAAACTCGCCACCCGGTATATAGGGGTGTGAGGAAGAGGAACTTAGATAAATGGGTTTGTGAAATGAGGGAGCCAAACAAAAAAACTAGGATTTGGCTAGGGACATTTCCAACGGCCGAGATGGCAGCCCGAGCACACGATGTTGCTGCAATGGCATTGAGGGGCCGCTACGCCTGTCTCAATTTCGCAGACTCGGTGTGGCGACTCCCAATTCCTGCAACCTCTAATACAAAAGATATTCAAAAGGCCGCTACCGAAGCCGCCGAGGCCTTTAGACCAGATAAGACTTTAATGACTAACGTTGTCCTTGCCGCAAAGGAACTAAGTATGTTTTGTGTGGAAGAGGAAGTGCTGAATATTCCAGATTTTTTTAGGGATATGGCACTAATGTCCCCTGCACATAGTTTTGAGCATGAGTATAAATATGAAGATTTCGATGTAGACTTTCAAGATGATGAGGATTTAAAAAATATGTGTGTTACATTCCCTCAGATTGTGACTATGCAATCGGAGTGCATTTGCCGCCGCATTAATTTCACCATAATATCAAGGATTGTGATTGTAGCACTGACTACAAACCCATATTTTTTAATAAAGAAATATTAA 750 0.4267 MVFTSNNSSFSYTISSKDSSFFATSTLDSEHRLAASCPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPATSNTKDIQKAATEAAEAFRPDKTLMTNVVLAAKELSMFCVEEEVLNIPDFFRDMALMSPAHSFEHEYKYEDFDVDFQDDEDLKNMCVTFPQIVTMQSECICRRINFTIISRIVIVALTTNPYFLIKKY 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01276 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 192 IPR045277 GO:0003700
Trre11g01276 249 FunFam Ethylene-responsive transcription factor 2 53 112 - -
Trre11g01276 249 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Trre11g01276 249 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Trre11g01276 249 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Trre11g01276 249 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Trre11g01276 249 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Trre11g01276 249 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Trre11g01276 249 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Trre11g01276 249 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01276 Trre-Chr11 12429615 12430650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01276 32 194 AP2-EREBP Transcription Factor Family AT5G51990 55.135 2.77e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre11g01276 AP2 9.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01276 - K09286 mtr:25497241 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01276 11 12429615 12430650 Trre11g01276 11 12429615 12430650 ECH