Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01273 ATGGCAACTATAACAACAACAACAACACTGTGCCATTACCACTTTCCCCTATCATCATCTTCCTTCAAAATCCACAAACTAACAAACTCACACTCACTTCCACTCTCACTCTCCCCGCGTCATCTCACTCTCCCCTTCAAATTCCAACCAAAAACCATTCCATCTCGTTTTCTTCTTTCCCAACCGCCACGCGCCTATGTAACCGGACCTGCATCCGACCCGAATGTTGCTGAATCGGATCCTAAACTTGACGGATTCAATCAAGAGAAACCATACATACCTAAGGTTATTACATGGGAGCTTCTTTCTTTGCTTCTTCTTAAGCATAAATTTCGTCTTGCTGTGTGTGTTGCTTCTCTCTTTGCCTGCACCACCTGTACCCTATCCATGCCCATTTTTTCTGGACGGTTTTTTGAAGTTCTTATTGGTGTCAGACCCGAACCGTTGTGGAGTCTTCTCAGTAAAATGGGAGTTCTGTATGCACTAGAGCCACTTTTTACAGTTATTTTTGTTATAAACATGAACATAGTGTGGGAGAAAGTTATGTCAACACTAAGAGCTCAAATCTTTGGAAAATTATTGATTCAGAAGGTTGAATTTTTTGACAAATACAAGGTAGGCGAAATCACTGGTTTGCTAACATCTGATTTGGGTTCTCTTAAAAATATTGTCAGTGAGAATGTTTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGTCACTGGAACAATATTCATACTTTTTACTTTATCCCCTCAACTGGCTCCAATTCTTGGTGTTCTGATGATCGCAGTTTCTGTTTCAATCGCTGTCTACAAGAGATCAACTTTGCCTGTGTTTATAGAACATGGTTTGGCCCAAGCATCTATCTCTGATTGTATAACAGAAACTTTTTCAGCTATTAGAACAGTGCGATCTTTTAGTGGAGAAAAGCGCCAAATGTTTACGTTTGCTAACCAGGTTCTGTCGTTCCAATTGAGTGGTATAAAGCTTGGAACTTTCAAATCTATTAACGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTAATTTCTCTGTATTGTCTCGGAGGAAGCAAAGTTAAGGCGGGTCAACTCTCTGTTGGAACTATGGCATCTTTTATTGGATATACATTCACTTTAACATTCGCTGTTCAAGGATTGGTGAATACTTTTGGAGATCTTCGTGGATCTCTTGCGGCTGTTGAGAGGATCAACTCTGTTTTGTCTGGAGTTCAAGTTGATGATGCCCTTGCCTATGGCTTAGAAAGAGAACTAAAACAAAAAGCAGTGAACAATGACAACCTTAAATTGTTCTTCTCTGATGGTTCTTCTGAGAAAAACCAAAATAATCATTTGCATTACATGTCAGCATTAAAAACGTCGACTAATCTGTTTAGCTTAGCTTGGTCTGGAGATATTTGTCTTGAAGATGTTTATTTCTCTTATCCTCTAAGGCCAGATGTGGAAATTTTGCGTGGCTTAAACTTAAAACTAAAATGTGGAACTGTAACTGCACTAGTAGGTGCTAGTGGTGCAGGAAAGAGTACAATAGTACAGCTATTGTCTCGTTTTTACGAGCCAGCAAGAGGTCGTATAACAGTTGGTGGAGAAGATGTCCGAACATTTGATAAAAGTGAATGGGCCCGGGTTGTTTCTATAGTAAATCAAGAACCTGTTCTGTTTTCGGTGTCCGTTGGAGAAAATATTGCATATGGACTTCCAGATGATGATGTTTCTAAAGACGATGTTATTAAGGCTGCAAAGGCAGCAAATGCTCATGAATTTATAATTTCACTTCCACAGGGCTACGATACACATGTTGGTGAGCGTGGAGGCTTACTGAGTGGAGGACAGAGGCAGAGAATTGCCATTGCCCGAGCTCTTTTGAAGAATGCTCCCATCCTTATACTTGATGAGGCTACAAGTGCCTTGGATACCGTCAGTGAGCGCTTGGTCCAAGATGCTCTCAACCGTTTGATGAACGGTAGGACAACATTAGTCATAGCTCACAGATTAAGCACAGTACAAAATGCACATCAAATTGCGCTATGTTCAGATGGGAGGATTGCAGAACTAGGAACTCATTTTGAATTATTGGCTAAAAAGGGCCAATATGCTTCATTGGTTGGTAATCAAAGACTTGCATTTGAATAG 2157 0.4038 MATITTTTTLCHYHFPLSSSSFKIHKLTNSHSLPLSLSPRHLTLPFKFQPKTIPSRFLLSQPPRAYVTGPASDPNVAESDPKLDGFNQEKPYIPKVITWELLSLLLLKHKFRLAVCVASLFACTTCTLSMPIFSGRFFEVLIGVRPEPLWSLLSKMGVLYALEPLFTVIFVINMNIVWEKVMSTLRAQIFGKLLIQKVEFFDKYKVGEITGLLTSDLGSLKNIVSENVSRDRGFRALSEVTGTIFILFTLSPQLAPILGVLMIAVSVSIAVYKRSTLPVFIEHGLAQASISDCITETFSAIRTVRSFSGEKRQMFTFANQVLSFQLSGIKLGTFKSINESLTRVAVYISLISLYCLGGSKVKAGQLSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGSLAAVERINSVLSGVQVDDALAYGLERELKQKAVNNDNLKLFFSDGSSEKNQNNHLHYMSALKTSTNLFSLAWSGDICLEDVYFSYPLRPDVEILRGLNLKLKCGTVTALVGASGAGKSTIVQLLSRFYEPARGRITVGGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDDDVSKDDVIKAAKAANAHEFIISLPQGYDTHVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDTVSERLVQDALNRLMNGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAKKGQYASLVGNQRLAFE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01273 718 SMART AAA_5 501 695 IPR003593 GO:0016887
Trre11g01273 718 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 114 397 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g01273 718 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 472 716 - -
Trre11g01273 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 713 IPR027417 -
Trre11g01273 718 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 91 716 IPR039421 -
Trre11g01273 718 Pfam ABC transporter 492 643 IPR003439 GO:0005524
Trre11g01273 718 Gene3D ABC transporter type 1, transmembrane domain 85 411 IPR036640 GO:0005524|GO:0016020
Trre11g01273 718 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 474 712 IPR003439 GO:0005524
Trre11g01273 718 ProSitePatterns ABC transporters family signature. 615 629 IPR017871 GO:0005524|GO:0016887
Trre11g01273 718 Pfam ABC transporter transmembrane region 115 384 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g01273 718 Gene3D - 472 715 IPR027417 -
Trre11g01273 718 CDD ABC_MTABC3_MDL1_MDL2 474 713 - -
Trre11g01273 718 SUPERFAMILY ABC transporter transmembrane region 101 405 IPR036640 GO:0005524|GO:0016020
Trre11g01273 718 CDD ABC_6TM_TAP_ABCB8_10_like 119 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01273 Trre-Chr11 12408773 12415480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01273 471 718 Calmodulin-binding Proteins AT2G36910 54.183 3.57e-75 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01273 K05657 - gmx:100791034 1115.91