Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01271 ATGGATTTCGACGGTGGTAACAAGCGCGTTTATAACCGACTCGGTGGTTCTACCGGTGGTGGTGATTCAAAGAATCAGAAAGTTTGTTTTCAATGGCAAGCGGGGAAGTGTAATCGTTATCCATGTCCATTTTTGCATAGTGAGTTACCTACTTCTAATGGAAATGGTGCACCTTCAAAGCGGCCTTATGCTGATAATTCGGGTTTTTCGGGTAACCGGCGTGGTGGTGGTTCGAGTTTTAATACGTGGGGGCCAGGGCGTGGTGGTGGACGTGGTCGCGGTGGTGGCCGTGGTTCTGTAGGAGGTGGGGGTAGGGGTGTTGTTGTGAATGTTGAAAAAGTTTGCACTTATTGGATTCAAGGAACTTGTAGTTATGGAGATAGGTGTAAGTTTCTTCATTCTTGGAGTTTAGGGGATGGATTTTCTTTATTGACTCAGCTTGAAGGACATAAGAAGGTTGTGAGTGGAATTGCTATGCCTTCTGGTTCGGATAAGCTTTATACTGGAAGTACTGATGAGACAGTAAGAGCTTGGGACTGCCAGTCCGGACAGTGTATAGCTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCCTGGCTTTTTGTTGGCATACCCAATTTTGTTAAGGCCTGGAACACACAAAATTCAATGGAGATAAGTCTAGATGGCCCTGTCGGACAAGTTTATGCACTTGTTGTGATTAATGATATGCTCTTTGCTGGTACGCAGGATGGAGCTATATTAGTATGGAAGTTTAATGTAGCTGCCAACTGTTTCGAGCCTGCTGCATCGCTTAAAGGCCACACGCGTGGTGTTGTTTCATTAGTTGTTGGTGCTAATAGACTTTATTCTGGTTCAATGGACAATACAATTAGAGTGTGGAACCTTGAAACTTTGCAGTGTTTGCAGACACTAACAGAGCACACGTCTGTTGTGATGTCCGTTCTTTGCTGGGATCAGTTCCTTATATCCTGTTCATTAGACAAAACAGTGAAGGTGTGGTTTGCTACAGAAACTGGAAATTTGGAAGTGACATATACTCACACTGAAGAACATGGTATACTCACCCTCTGTGGGATGCATGATTCACAAGGCAAGCCCATATTGATGTGTGCTTGCAATGATAACACTGTTCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGTAAGATATTCAACAAACTAGAAGTGCGGGCAATTCAGACCGGTCCTGGTACCATATTCTTCACCGGTGATGGAACCGGCCAAGTGAGAGTTTGGAATTGGATACCTGAGCCAGCGGCGGCTAATAGCACCCAATAA 1320 0.4485 MDFDGGNKRVYNRLGGSTGGGDSKNQKVCFQWQAGKCNRYPCPFLHSELPTSNGNGAPSKRPYADNSGFSGNRRGGGSSFNTWGPGRGGGRGRGGGRGSVGGGGRGVVVNVEKVCTYWIQGTCSYGDRCKFLHSWSLGDGFSLLTQLEGHKKVVSGIAMPSGSDKLYTGSTDETVRAWDCQSGQCIAVINLGGEVGCMISEGPWLFVGIPNFVKAWNTQNSMEISLDGPVGQVYALVVINDMLFAGTQDGAILVWKFNVAANCFEPAASLKGHTRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLISCSLDKTVKVWFATETGNLEVTYTHTEEHGILTLCGMHDSQGKPILMCACNDNTVRLYDLPSFAERGKIFNKLEVRAIQTGPGTIFFTGDGTGQVRVWNWIPEPAAANSTQ 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01271 439 SMART c3hfinal6 24 48 IPR000571 GO:0046872
Trre11g01271 439 SMART c3hfinal6 111 135 IPR000571 GO:0046872
Trre11g01271 439 Gene3D - 239 439 IPR015943 GO:0005515
Trre11g01271 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 179 - -
Trre11g01271 439 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Trre11g01271 439 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Trre11g01271 439 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Trre11g01271 439 ProSiteProfiles Zinc finger C3H1-type profile. 23 49 IPR000571 GO:0046872
Trre11g01271 439 FunFam Zinc finger CCCH domain-containing protein 48 135 225 - -
Trre11g01271 439 SUPERFAMILY WD40 repeat-like 135 430 IPR036322 GO:0005515
Trre11g01271 439 FunFam Zinc finger CCCH domain-containing protein 48 227 435 - -
Trre11g01271 439 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Trre11g01271 439 PANTHER - 112 436 IPR044715 -
Trre11g01271 439 SMART WD40_4 219 256 IPR001680 GO:0005515
Trre11g01271 439 SMART WD40_4 263 300 IPR001680 GO:0005515
Trre11g01271 439 SMART WD40_4 344 387 IPR001680 GO:0005515
Trre11g01271 439 SMART WD40_4 140 179 IPR001680 GO:0005515
Trre11g01271 439 SMART WD40_4 303 340 IPR001680 GO:0005515
Trre11g01271 439 SMART WD40_4 390 427 IPR001680 GO:0005515
Trre11g01271 439 Pfam Zinc finger domain 115 133 - -
Trre11g01271 439 Gene3D - 122 223 IPR015943 GO:0005515
Trre11g01271 439 Pfam WD domain, G-beta repeat 143 179 IPR001680 GO:0005515
Trre11g01271 439 Pfam WD domain, G-beta repeat 267 300 IPR001680 GO:0005515
Trre11g01271 439 Pfam WD domain, G-beta repeat 305 339 IPR001680 GO:0005515
Trre11g01271 439 SUPERFAMILY CCCH zinc finger 112 134 IPR036855 GO:0046872
Trre11g01271 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 188 IPR001680 GO:0005515
Trre11g01271 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 303 - -
Trre11g01271 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 309 IPR001680 GO:0005515
Trre11g01271 439 ProSiteProfiles Zinc finger C3H1-type profile. 110 136 IPR000571 GO:0046872
Trre11g01271 439 MobiDBLite consensus disorder prediction 53 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01271 Trre-Chr11 12397665 12401498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01271 242 427 Miscellaneous Gene Families AT5G08390 25.758 3.81e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre11g01271 WD40 0.018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01271 - - mtr:25497231 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01271 11 12397665 12401498 Trre11g01271 11 12397665 12401498 ECH