LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g01269	ATGGGTAAAGGGGGAATGTCAGTTGATGATGATCAACAGAACATGGCTGCTTGGCTTGTTGGTTTAAACACTCTCAAGATTCAACCTTTCAATCTTCCTTCTCTTGGACCCCATGATGTCAGAATAAGAATGAAAGCTGTTGGAATCTGTGGGAGTGATGTTCACTACCTCAAGACAATGAGATGTGCAGATTTTATAGTTAAAGAACCGATGGTTATTGGTCACGAGTGTGCTGGGATTATAGAAGAAGTCGGTAGTCAAGTACAGACTTTGGTGCCTGGTGACCGTGTGGCGATCGAGCCTGGGATCAGTTGTTGGCGATGTGACCATTGCAAACTTGGTCGATATAATCTTTGCCCTGAGATGAAGTTTTTTGCTACTCCACCAGTTCATGGTTCGTTGGCTAATCAGATAGTACATCCAGCAGACCTATGTTTTAAATTACCAGACAACGTGAGTTTGGAGGAAGGGGCAATGTGTGAACCGTTAAGTGTCGGCGTTCATGCGTGTAGGCGAGCTAATATAGGACCAGAAACAAATGTGTTGATTATGGGAGCAGGACCTATTGGACTTGTTACAATGCTTTCCGCTCGCGCTTTTGGTGCACCTAGGATTGTCGTTGTGGATGTGGATGACCATCGTTTATCTGTTGCAAAAAGTCTTGGTGCAGATGATATTGTTAAAGTTTCAACAAACATTCAGGATGTAACTGAAGAAGTTAAGCAGATTCATAATGTTATGGGAGGTGGTGTTGATGTTACCTTTGATTGTGCTGGTTTTAACAAAACCATGACTACAGCATTGAATGCTACTCAACCAGGTGGCAAAGTTTGTCTAGTTGGAATGGGTCATTCCGAAATGACGGTGCCACTCACACCAGCTGCTGCAAGGGAAGTTGATGTGGTTGGCATTTTTCGCTATAAGAATACATGGCCTCTATGCCTTGAGTTTATAAAGAGTGGAAAAATTGATGTAAAACCACTTATAACTCATAGGTTTGGATTTTCGCAGAAGGAAGTGGAAGAAGCTTTTGAAACAAGTGCTCGTGGAGGTAATGCTATTAAGGTCATGTTTAATCTTTAG	1083	0.4238	MGKGGMSVDDDQQNMAAWLVGLNTLKIQPFNLPSLGPHDVRIRMKAVGICGSDVHYLKTMRCADFIVKEPMVIGHECAGIIEEVGSQVQTLVPGDRVAIEPGISCWRCDHCKLGRYNLCPEMKFFATPPVHGSLANQIVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLSARAFGAPRIVVVDVDDHRLSVAKSLGADDIVKVSTNIQDVTEEVKQIHNVMGGGVDVTFDCAGFNKTMTTALNATQPGGKVCLVGMGHSEMTVPLTPAAAREVDVVGIFRYKNTWPLCLEFIKSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNL	360

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre11g01269	360	Pfam	Zinc-binding dehydrogenase	188	319	IPR013149	-
Trre11g01269	360	CDD	sorbitol_DH	16	359	IPR045306	GO:0016616
Trre11g01269	360	Pfam	Alcohol dehydrogenase GroES-like domain	37	148	IPR013154	-
Trre11g01269	360	SMART	PKS_ER_names_mod	21	358	IPR020843	GO:0016491
Trre11g01269	360	FunFam	Sorbitol dehydrogenase	165	305	-	-
Trre11g01269	360	Gene3D	-	165	305	-	-
Trre11g01269	360	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	151	324	IPR036291	-
Trre11g01269	360	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	74	88	IPR002328	GO:0008270\|GO:0016491
Trre11g01269	360	Gene3D	-	25	346	-	-
Trre11g01269	360	PANTHER	SORBITOL DEHYDROGENASE	13	360	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g01269	Trre-Chr11	12370074	12373037	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g01269	27	293	Monolignol Biosynthesis Gene Families	AT4G37980	26.978	4.54e-19	84.7

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g01269	K00008		-	gmx:100820630	673.315

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre11g01269	11	12370074	12373037	Trre11g01269	11	12370074	12373037	ECH

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