Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01269 ATGGGTAAAGGGGGAATGTCAGTTGATGATGATCAACAGAACATGGCTGCTTGGCTTGTTGGTTTAAACACTCTCAAGATTCAACCTTTCAATCTTCCTTCTCTTGGACCCCATGATGTCAGAATAAGAATGAAAGCTGTTGGAATCTGTGGGAGTGATGTTCACTACCTCAAGACAATGAGATGTGCAGATTTTATAGTTAAAGAACCGATGGTTATTGGTCACGAGTGTGCTGGGATTATAGAAGAAGTCGGTAGTCAAGTACAGACTTTGGTGCCTGGTGACCGTGTGGCGATCGAGCCTGGGATCAGTTGTTGGCGATGTGACCATTGCAAACTTGGTCGATATAATCTTTGCCCTGAGATGAAGTTTTTTGCTACTCCACCAGTTCATGGTTCGTTGGCTAATCAGATAGTACATCCAGCAGACCTATGTTTTAAATTACCAGACAACGTGAGTTTGGAGGAAGGGGCAATGTGTGAACCGTTAAGTGTCGGCGTTCATGCGTGTAGGCGAGCTAATATAGGACCAGAAACAAATGTGTTGATTATGGGAGCAGGACCTATTGGACTTGTTACAATGCTTTCCGCTCGCGCTTTTGGTGCACCTAGGATTGTCGTTGTGGATGTGGATGACCATCGTTTATCTGTTGCAAAAAGTCTTGGTGCAGATGATATTGTTAAAGTTTCAACAAACATTCAGGATGTAACTGAAGAAGTTAAGCAGATTCATAATGTTATGGGAGGTGGTGTTGATGTTACCTTTGATTGTGCTGGTTTTAACAAAACCATGACTACAGCATTGAATGCTACTCAACCAGGTGGCAAAGTTTGTCTAGTTGGAATGGGTCATTCCGAAATGACGGTGCCACTCACACCAGCTGCTGCAAGGGAAGTTGATGTGGTTGGCATTTTTCGCTATAAGAATACATGGCCTCTATGCCTTGAGTTTATAAAGAGTGGAAAAATTGATGTAAAACCACTTATAACTCATAGGTTTGGATTTTCGCAGAAGGAAGTGGAAGAAGCTTTTGAAACAAGTGCTCGTGGAGGTAATGCTATTAAGGTCATGTTTAATCTTTAG 1083 0.4238 MGKGGMSVDDDQQNMAAWLVGLNTLKIQPFNLPSLGPHDVRIRMKAVGICGSDVHYLKTMRCADFIVKEPMVIGHECAGIIEEVGSQVQTLVPGDRVAIEPGISCWRCDHCKLGRYNLCPEMKFFATPPVHGSLANQIVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLSARAFGAPRIVVVDVDDHRLSVAKSLGADDIVKVSTNIQDVTEEVKQIHNVMGGGVDVTFDCAGFNKTMTTALNATQPGGKVCLVGMGHSEMTVPLTPAAAREVDVVGIFRYKNTWPLCLEFIKSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01269 360 Pfam Zinc-binding dehydrogenase 188 319 IPR013149 -
Trre11g01269 360 CDD sorbitol_DH 16 359 IPR045306 GO:0016616
Trre11g01269 360 Pfam Alcohol dehydrogenase GroES-like domain 37 148 IPR013154 -
Trre11g01269 360 SMART PKS_ER_names_mod 21 358 IPR020843 GO:0016491
Trre11g01269 360 FunFam Sorbitol dehydrogenase 165 305 - -
Trre11g01269 360 Gene3D - 165 305 - -
Trre11g01269 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 151 324 IPR036291 -
Trre11g01269 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Trre11g01269 360 Gene3D - 25 346 - -
Trre11g01269 360 PANTHER SORBITOL DEHYDROGENASE 13 360 - -
Trre11g01269 360 SUPERFAMILY GroES-like 14 186 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01269 Trre-Chr11 12370074 12373037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01269 27 293 Monolignol Biosynthesis Gene Families AT4G37980 26.978 4.54e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01269 K00008 - gmx:100820630 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01269 11 12370074 12373037 Trre11g01269 11 12370074 12373037 ECH