Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01267 ATGGTAAAGAAGACCATGGTCGAGAAGATGACTACTCGTAACTCGTATTGGGATCTTGTTTGGAGTGCACCAAGAATCAAAGGATATTTTGATGTGATTAATGGAACATGTTTTGAAGTTATAGTTCAAAATGAGGATCAGGTGGAGCTTTCATTCAAGAGAATGTGGGATCATTCTCTTGAGGGAAAGTTTGTCCCCTTAAACATTGACAAAAGATTCATTTTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTACAAGGATGGCCAGATTTTGATATGAGTGAAACAAGGATCACTTTCAAGCTCAGAAAAGATAAGTAA 339 0.3776 MVKKTMVEKMTTRNSYWDLVWSAPRIKGYFDVINGTCFEVIVQNEDQVELSFKRMWDHSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLQGWPDFDMSETRITFKLRKDK 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01267 112 Pfam Rhamnogalacturonate lyase family 8 112 IPR010325 -
Trre11g01267 112 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 8 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01267 Trre-Chr11 12363002 12364692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01267 7 112 Polysaccharide Lyase AT1G09910 66.981 5.41e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01267 K18195 - gmx:100814185 191.43