Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01266 ATGCGATATCGAACCCTAAGTCACTATCTCTCTCAGGTTCCTCCATCGCTCTCACCCACTATTTCGATCCGTTCACTCTCTCGGTTCCTCCATCGCTCTCACTCACCATCTCTGATTCTCAATCGCCCATCTCTGTTCATCACTCTCTCGGTTCCTATCAATCTCAATCGAAAGTTCCTCTCCGAATCTAAGACGACCCAGGAGTCTATTAACAACAATCTCGCTCTTGTGATGAAGAGTGGGAAGTATACTTTGGGGTATAAAACTGTTCTCAAGTCTCTCAGAAGCTCCAAAGGGATTGCATAG 306 0.4608 MRYRTLSHYLSQVPPSLSPTISIRSLSRFLHRSHSPSLILNRPSLFITLSVPINLNRKFLSESKTTQESINNNLALVMKSGKYTLGYKTVLKSLRSSKGIA 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01266 101 Gene3D - 61 100 IPR029064 -
Trre11g01266 101 PANTHER RIBOSOMAL PROTEIN L30 62 99 IPR039109 GO:0003723
Trre11g01266 101 SUPERFAMILY L30e-like 69 98 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01266 Trre-Chr11 12361562 12362111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01266 62 99 Cytoplasmic Ribosomal Protein Gene Family AT3G18740 76.316 1.39e-13 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01266 K02908 - atr:18427064 67.3958