Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01250 ATGGCTTCCGATCTTGAACTACAAGCCAAAGAGGCCTTTGTTGAAGACCACTTTGAATTAGCCGTGGAACTTCTCACACAAGCCATTGATCTTGATCCTAAAAAATCACAACTTTTTGCTGATCGTGCTCAAGCCAATATCAAACTCAATAACTTCACTGAGGCAGTTGCTGATGCAAACAAAGCAATTGAGTTGGATCCTTCTCTATCAAAGGCATATCTGCGTAAAGGTATTGCATGCATGAAGCTTGAGGAATATCAAACTGCTCAGACTGCTTTAGAGACAGGTGCTTCATTGGCTGAGGACAAAGAGAAATCAAGATTTGTTAATTTGATCAAAGAATGTGAAAAACTCATTGCAGAAGAATCTTATGCCATACCTACACAGGAAAACTCCACAGCACAGGATGCAATTCTTCAAGATGTTCAGCTAGAAGATCTTTCAGAGAAGCCGATAGTGGCGGTTGCTAAGCCTAAATATAGGCACGAATTTTATCAGAAACCTGAAGAAGTGGTTGTAACCATATTTGCAAAGGGTGTCTCAAAGGAAAGCATTACTGTCGAATTTGGTGAACAAATACTGAGTGTCAAAATTGATGTCCCTGGAGAAGATTCATATGCTTTACAACATCGCTTGTTTGGAAAGATTGTACCTTCCAGTTGCCGGTACGAAGTTTTGTCCACCAAAATTGAAATTCGCCTTGCTAAAGCTGAATCTATTCCTTGGAAGTCCCTAGAATTCACCACAGAAACCACTGTTGCACCGAAGGCTATTGTTTCTTCAGTTACTGGAACTCAAAGACCAACTTACCCGTCCTCAAAACCAAAAAGAGTAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAAGAGGAAAAAGATGAAAACCTTGATGGCGATGCCGCATTGAACAAATTTTTCCGGGAAATATATCAAGATGCTGATGAGGATACTAGAAGAGCAATGAAAAAGTCATTTGTGGAGTCTAATGGAACAGTGCTGTCAACAAACTGGAAGGAAGTAGGAACAAAGAAGGTTGAGGGAAGTCCTCCAGATGGCATGGAGTTGAAGAAATGGGAATATTAA 1083 0.4026 MASDLELQAKEAFVEDHFELAVELLTQAIDLDPKKSQLFADRAQANIKLNNFTEAVADANKAIELDPSLSKAYLRKGIACMKLEEYQTAQTALETGASLAEDKEKSRFVNLIKECEKLIAEESYAIPTQENSTAQDAILQDVQLEDLSEKPIVAVAKPKYRHEFYQKPEEVVVTIFAKGVSKESITVEFGEQILSVKIDVPGEDSYALQHRLFGKIVPSSCRYEVLSTKIEIRLAKAESIPWKSLEFTTETTVAPKAIVSSVTGTQRPTYPSSKPKRVDWDKLEAQVKKEEKDENLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01250 360 Pfam CS domain 161 236 IPR007052 -
Trre11g01250 360 CDD p23_CS_SGT1_like 163 246 - -
Trre11g01250 360 ProSiteProfiles SGS domain profile. 269 360 IPR007699 -
Trre11g01250 360 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Trre11g01250 360 SUPERFAMILY TPR-like 5 103 IPR011990 GO:0005515
Trre11g01250 360 Gene3D - 153 263 IPR008978 -
Trre11g01250 360 FunFam Protein SGT1 homolog A 155 259 - -
Trre11g01250 360 Pfam Tetratricopeptide repeat 39 68 IPR019734 GO:0005515
Trre11g01250 360 ProSiteProfiles CS domain profile. 157 246 IPR007052 -
Trre11g01250 360 Gene3D Tetratricopeptide repeat domain 1 134 IPR011990 GO:0005515
Trre11g01250 360 SMART tpr_5 2 35 IPR019734 GO:0005515
Trre11g01250 360 SMART tpr_5 70 103 IPR019734 GO:0005515
Trre11g01250 360 SMART tpr_5 36 69 IPR019734 GO:0005515
Trre11g01250 360 SUPERFAMILY HSP20-like chaperones 154 253 IPR008978 -
Trre11g01250 360 Pfam SGS domain 279 358 IPR007699 -
Trre11g01250 360 PANTHER PROTEIN SGT1 HOMOLOG 1 358 IPR044563 GO:0051087
Trre11g01250 360 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01250 Trre-Chr11 12168111 12172168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01250 1 96 U-box Gene Family AT3G07370 29.000 5.88e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01250 K12795 - gmx:100780174 549.28