Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g01250 | ATGGCTTCCGATCTTGAACTACAAGCCAAAGAGGCCTTTGTTGAAGACCACTTTGAATTAGCCGTGGAACTTCTCACACAAGCCATTGATCTTGATCCTAAAAAATCACAACTTTTTGCTGATCGTGCTCAAGCCAATATCAAACTCAATAACTTCACTGAGGCAGTTGCTGATGCAAACAAAGCAATTGAGTTGGATCCTTCTCTATCAAAGGCATATCTGCGTAAAGGTATTGCATGCATGAAGCTTGAGGAATATCAAACTGCTCAGACTGCTTTAGAGACAGGTGCTTCATTGGCTGAGGACAAAGAGAAATCAAGATTTGTTAATTTGATCAAAGAATGTGAAAAACTCATTGCAGAAGAATCTTATGCCATACCTACACAGGAAAACTCCACAGCACAGGATGCAATTCTTCAAGATGTTCAGCTAGAAGATCTTTCAGAGAAGCCGATAGTGGCGGTTGCTAAGCCTAAATATAGGCACGAATTTTATCAGAAACCTGAAGAAGTGGTTGTAACCATATTTGCAAAGGGTGTCTCAAAGGAAAGCATTACTGTCGAATTTGGTGAACAAATACTGAGTGTCAAAATTGATGTCCCTGGAGAAGATTCATATGCTTTACAACATCGCTTGTTTGGAAAGATTGTACCTTCCAGTTGCCGGTACGAAGTTTTGTCCACCAAAATTGAAATTCGCCTTGCTAAAGCTGAATCTATTCCTTGGAAGTCCCTAGAATTCACCACAGAAACCACTGTTGCACCGAAGGCTATTGTTTCTTCAGTTACTGGAACTCAAAGACCAACTTACCCGTCCTCAAAACCAAAAAGAGTAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAAGAGGAAAAAGATGAAAACCTTGATGGCGATGCCGCATTGAACAAATTTTTCCGGGAAATATATCAAGATGCTGATGAGGATACTAGAAGAGCAATGAAAAAGTCATTTGTGGAGTCTAATGGAACAGTGCTGTCAACAAACTGGAAGGAAGTAGGAACAAAGAAGGTTGAGGGAAGTCCTCCAGATGGCATGGAGTTGAAGAAATGGGAATATTAA | 1083 | 0.4026 | MASDLELQAKEAFVEDHFELAVELLTQAIDLDPKKSQLFADRAQANIKLNNFTEAVADANKAIELDPSLSKAYLRKGIACMKLEEYQTAQTALETGASLAEDKEKSRFVNLIKECEKLIAEESYAIPTQENSTAQDAILQDVQLEDLSEKPIVAVAKPKYRHEFYQKPEEVVVTIFAKGVSKESITVEFGEQILSVKIDVPGEDSYALQHRLFGKIVPSSCRYEVLSTKIEIRLAKAESIPWKSLEFTTETTVAPKAIVSSVTGTQRPTYPSSKPKRVDWDKLEAQVKKEEKDENLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEY | 360 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g01250 | 360 | Pfam | CS domain | 161 | 236 | IPR007052 | - | |
Trre11g01250 | 360 | CDD | p23_CS_SGT1_like | 163 | 246 | - | - | |
Trre11g01250 | 360 | ProSiteProfiles | SGS domain profile. | 269 | 360 | IPR007699 | - | |
Trre11g01250 | 360 | ProSiteProfiles | TPR repeat profile. | 36 | 69 | IPR019734 | GO:0005515 | |
Trre11g01250 | 360 | SUPERFAMILY | TPR-like | 5 | 103 | IPR011990 | GO:0005515 | |
Trre11g01250 | 360 | Gene3D | - | 153 | 263 | IPR008978 | - | |
Trre11g01250 | 360 | FunFam | Protein SGT1 homolog A | 155 | 259 | - | - | |
Trre11g01250 | 360 | Pfam | Tetratricopeptide repeat | 39 | 68 | IPR019734 | GO:0005515 | |
Trre11g01250 | 360 | ProSiteProfiles | CS domain profile. | 157 | 246 | IPR007052 | - | |
Trre11g01250 | 360 | Gene3D | Tetratricopeptide repeat domain | 1 | 134 | IPR011990 | GO:0005515 | |
Trre11g01250 | 360 | SMART | tpr_5 | 2 | 35 | IPR019734 | GO:0005515 | |
Trre11g01250 | 360 | SMART | tpr_5 | 70 | 103 | IPR019734 | GO:0005515 | |
Trre11g01250 | 360 | SMART | tpr_5 | 36 | 69 | IPR019734 | GO:0005515 | |
Trre11g01250 | 360 | SUPERFAMILY | HSP20-like chaperones | 154 | 253 | IPR008978 | - | |
Trre11g01250 | 360 | Pfam | SGS domain | 279 | 358 | IPR007699 | - | |
Trre11g01250 | 360 | PANTHER | PROTEIN SGT1 HOMOLOG | 1 | 358 | IPR044563 | GO:0051087 | |
Trre11g01250 | 360 | Coils | Coil | 42 | 62 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g01250 | Trre-Chr11 | 12168111 | 12172168 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g01250 | 1 | 96 | U-box Gene Family | AT3G07370 | 29.000 | 5.88e-06 | 45.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g01250 | K12795 | - | gmx:100780174 | 549.28 |