Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01249 ATGGCCTTCACTACCCCCACATCCACTATTCGCACCCAGACGACCACCACTGCTACCCCTACTACTGCCATTATTCCAAAAATCATTATCAATACTGCATCTTCCCCCATCACAACTATGCCCACCCTCTCCACCACCACAACACACATGACCACCACTTCCAATACTATTACTAACATTAATACTAGTGTTCATCACTCAAATCAAAGTTCTACCTTTTTTGATTTTCCAACACTCATTGAACAACAACTAGTGCAACCAAATGAGTTAACCAAGCTAAACAAATTTGAACTTGACTTCAATTCCAACACCATTACTCCAATACCCACAACCACTATCGGCACCTTCAACATCATTACTCCAACCACTACCATCCCAATTACCCCTATTTACACTACCACCACCTTCACTACCCCCACATCAACTATTGGCACCCCTGCAACCACCATTAGTACCCCCACTACGAATAACATTAATATTTGTGTTCAAGGAACCAACCATTATCCTCCCATTTTTCATTTTCCAATACCCATTAAACCACAAATTCAACCAAACAACAATAATCAAGAGTCCATTCCCAAACATGTTACCTGCATTAAATTTACAACTGCTCATTTTGATCGTGCATACAATTATCCACCAGTTCCACAACAACTCTCAATTGAGAGCAATCAACTATCTCTAGTACCCCAAATTAATTCTCAGTTTTTATCAAATACACATCTGCAAGAACCAAAACATAAATCAAGAAAAAGAAAAAATAATGATCATATGAGATTCGAGGACCATGTCATTGTAGAGAAGCCCAAAGGAGATTCATGGACATGGATAAAATACGGAGAAAGACCCATTAGTGGGACTCCACATCCAAGGAGCTACTACAAATGTAGTCGTTTTAGAGATTGTCCAGCAAGAAAACTGGTACAAAAATGCACAACCATAGAGAACAATTATGTTGTGACATATAATGGAGAGCACAACCACGAAAAACCAACAGATAATCTGAACTCTGTCATTGGGACCTCCTGGAACAATTCATCACAGACTAGATTACCGGCTGTAGGAGAAGCCGGTTCATTTCCAGATGTCGGAAACTTCCATTCGCCTAATACGGCGACGCAACAATTTGATCAGCCGGAGAGCTTATATGACGACTGTGATATTTTGATAGAAAAAATGAAAACCGTGTTAGAGGATTTCTTACTGGACTTCAACCACCTTATAGCGTTGTTCCCTTAG 1239 0.4003 MAFTTPTSTIRTQTTTTATPTTAIIPKIIINTASSPITTMPTLSTTTTHMTTTSNTITNINTSVHHSNQSSTFFDFPTLIEQQLVQPNELTKLNKFELDFNSNTITPIPTTTIGTFNIITPTTTIPITPIYTTTTFTTPTSTIGTPATTISTPTTNNINICVQGTNHYPPIFHFPIPIKPQIQPNNNNQESIPKHVTCIKFTTAHFDRAYNYPPVPQQLSIESNQLSLVPQINSQFLSNTHLQEPKHKSRKRKNNDHMRFEDHVIVEKPKGDSWTWIKYGERPISGTPHPRSYYKCSRFRDCPARKLVQKCTTIENNYVVTYNGEHNHEKPTDNLNSVIGTSWNNSSQTRLPAVGEAGSFPDVGNFHSPNTATQQFDQPESLYDDCDILIEKMKTVLEDFLLDFNHLIALFP 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01249 412 ProSiteProfiles WRKY domain profile. 272 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g01249 412 Pfam WRKY DNA -binding domain 272 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g01249 412 SUPERFAMILY WRKY DNA-binding domain 268 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre11g01249 412 Gene3D WRKY domain 257 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre11g01249 412 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 187 349 IPR044810 GO:0003700
Trre11g01249 412 SMART WRKY_cls 270 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01249 Trre-Chr11 12155608 12158311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01249 248 346 WRKY Transcription Factor Family AT5G52830 46.465 2.80e-21 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre11g01249 WRKY 1.2e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01249 - K13425 tpra:123905881 347.821