Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01221 ATGGTATCCAAAAACCCGAACCCGCCCGAAGGTTTCTGCTTGGATCCGACTCCCTTGGCTCTACCCGGTTTCGGCCCTTTCGCCTCCGTCTCTGCAGCCGCCAACTCTTCCGACGACGCCTCCAAGAAAATTCGCAAACCATATACTATAACCAAGTCTAGAGAGAATTGGACTGAACCTGAACATGACAAGTTCCTTGAAGCTCTTCAACTGTTTGACCGTGACTGGAAAAAGATCGAAGCATTTATTGGATCAAAGACCGTTATACAGATACGTAGCCATGCACAAAAATACTTTCTAAAGGTTCAAAAGAGTGGAGCAAATGAACATCTTCCCCCACCCAGGCCTAAAAGAAAAGCTGCTCATCCATATCCTCAAAAAGCTTCTAAAAGTGCTCCTGTGCTCCCACAAGTACCAGGATCTTTTCAGTCTTCAACACCTTTGCTTGAACCTGGATTTACACTGAATAATGAATCCATGCCAATGCTTGAAACTCCTATTATGAACACTGTGGTGTCTTCTTGGTCAAACCACCCGTTGCAAACTACAAATTTATTGCAAGTGCCAAAAGTAAATAATTCCTGCAGTAGCAGTGAAAGTACTCCTAAAGTGCGGCCGGTTGGTGAATCTAATAGTCAAACGAATAAAATCCTTCCATTGAGAGTTCTTCCAGATTTTTCTCAAGTATACAACTTCATTGGCAGTGTATTTGACCCAGAAGCAACTGAGCATCTACAAAAACTTAAAGAAATGGACCGTATAGATGTTGAGACGGTGCTTTTGTTGATGAGAAATCTGTCTATCAACTTAACTAGCCCAGATTTTGAGGATCATGGGGGTGAATAA 846 0.4267 MVSKNPNPPEGFCLDPTPLALPGFGPFASVSAAANSSDDASKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKSGANEHLPPPRPKRKAAHPYPQKASKSAPVLPQVPGSFQSSTPLLEPGFTLNNESMPMLETPIMNTVVSSWSNHPLQTTNLLQVPKVNNSCSSSESTPKVRPVGESNSQTNKILPLRVLPDFSQVYNFIGSVFDPEATEHLQKLKEMDRIDVETVLLLMRNLSINLTSPDFEDHGGE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01221 281 Gene3D - 56 104 - -
Trre11g01221 281 ProSiteProfiles SANT domain profile. 52 103 IPR017884 -
Trre11g01221 281 PANTHER SWI/SNF COMPLEX-RELATED 37 271 - -
Trre11g01221 281 CDD SANT 56 99 IPR001005 -
Trre11g01221 281 MobiDBLite consensus disorder prediction 104 139 - -
Trre11g01221 281 Pfam Myb-like DNA-binding domain 54 99 IPR001005 -
Trre11g01221 281 MobiDBLite consensus disorder prediction 192 211 - -
Trre11g01221 281 FunFam protein REVEILLE 6 isoform X1 56 104 - -
Trre11g01221 281 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Trre11g01221 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Trre11g01221 281 NCBIfam myb-like DNA-binding domain, SHAQKYF class 52 101 IPR006447 GO:0003677
Trre11g01221 281 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Trre11g01221 281 SMART sant 53 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01221 Trre-Chr11 11738038 11749715 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre11g01221 Myb_DNA-binding 6.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01221 - - gmx:100783949 444.506