Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01220 ATGGTATCCAAAAACCCGAACCCGCCCGAAGGTTTCTGCTTGGATCCGACTCCCTTGGCTCTACCCGGTTTCGGCCCTTTCGCCTCCGTCTCTGCAGCCGCCAACTCTTCCGACGACGCCTCCAAGAAAATTCGCAAACCATATACTATAACCAAGTCTAGAGAGAATTGGACTGAACCTGAACATGACAAGTTCCTTGAAGCTCTTCAACTGTTTGACCGTGACTGGAAAAAGATCGAAGCATTTATTGGATCAAAGACCGTTATACAGATACGTAGCCATGCACAAAAATACTTTCTAAAGGTTCAAAAGAGTGGAGCAAATGAACATCTTCCCCCACCCAGGCCTAAAAGAAAAGCTGCTCATCCATATCCTCAAAAAGCTTCTAAAAGTGCTCCTGTGCTCCCACAAGTACCAGGATCTTTTCAGTCTTCAACACCTTTGCTTGAACCTGGATTTACACTGAATAATGAATCCATGCCAATGCTTGAAACTCCTATTATGAACACTGTGGTGTCTTCTTGGTCAAACCACCCGTTGCAAACTACAAATTTATTGCAAGTGCCAAAAGTAAATAATTCCTGCAGTAGCAGTGAAAGTACTCCTAAAGTGCGGCCGGTTGGTGAATCTAATAGTCAAACGAATAAAATCCTTCCATTGAGAGTTCTTCCAGATTTTTCTCAAGTATACAACTTCATTGGCAGTGTATTTGACCCAGAAGCAACTGAGCATCTACAAAAACTTAAAGAAATGGACCGTATAGATGTTGAGACGGTGCTTTTGTTGATGAGAAATCTGTCTATCAACTTAACTAGCCCAGATTTTGAGGATCATAAAAAGCTGCTTTCATCCTATGAAGTTGATCTAGAAACAAATAACTATCTCAATCCAGATAGACTTATACACGACGAACAGTTGAAGAGTGCTACTACTTAA 936 0.4167 MVSKNPNPPEGFCLDPTPLALPGFGPFASVSAAANSSDDASKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKSGANEHLPPPRPKRKAAHPYPQKASKSAPVLPQVPGSFQSSTPLLEPGFTLNNESMPMLETPIMNTVVSSWSNHPLQTTNLLQVPKVNNSCSSSESTPKVRPVGESNSQTNKILPLRVLPDFSQVYNFIGSVFDPEATEHLQKLKEMDRIDVETVLLLMRNLSINLTSPDFEDHKKLLSSYEVDLETNNYLNPDRLIHDEQLKSATT 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01220 311 FunFam protein REVEILLE 6 isoform X1 56 104 - -
Trre11g01220 311 ProSiteProfiles SANT domain profile. 52 103 IPR017884 -
Trre11g01220 311 Gene3D - 56 104 - -
Trre11g01220 311 PANTHER SWI/SNF COMPLEX-RELATED 37 280 - -
Trre11g01220 311 Pfam Myb-like DNA-binding domain 54 99 IPR001005 -
Trre11g01220 311 CDD SANT 56 99 IPR001005 -
Trre11g01220 311 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Trre11g01220 311 MobiDBLite consensus disorder prediction 104 139 - -
Trre11g01220 311 MobiDBLite consensus disorder prediction 192 211 - -
Trre11g01220 311 NCBIfam myb-like DNA-binding domain, SHAQKYF class 52 101 IPR006447 GO:0003677
Trre11g01220 311 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Trre11g01220 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Trre11g01220 311 SMART sant 53 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01220 Trre-Chr11 11737327 11749715 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre11g01220 Myb_DNA-binding 7.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01220 - - gmx:100783949 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01220 11 11737327 11749715 Trre11g01220 11 11737327 11749715 ECH