Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01209 ATGGCGGTAGGACTAACCGCCACAATAACCTTACAACCCATAAACCGTCACTACAAACCTTTATTTTCTCATCTTCAAAAACCAACCCCAACACTTATTTTTTCACCTTTAAGATGTTTTTTACATCGAACAACGACCTTAAAAACTCAAAGATTGAAAAACTTCACTCTTTGTGTTCTCATGGAGGACCCAAAACAAGATACCCAAATGGAAATTGAAGCAGAAAAATCACCCCTCTTAGAAAATAACTATGTTCCTCAAGTTTTGTCACAAAAAATGGAAGAGAAAATGAAAAGGAAAAAATCAGAGAGGTTTACTTATCTTATTGCAGCGGTTATGTCTAGTCTTGGTATAACATCTATGGCTGTGTTGGCTGTTTATTATAGATTTTCATGGCAAATGGAGGGTAGTGGAGAAATTCCATGGTCAGAAATGTTTGGTACATTTGCTCTATCAGTGGGTGCTGCTGTGGGTATGGAGTTTTGGGCTAGATGGGCTCACAAGGCTCTTTGGCATGCTTCTTTATGGCACATGCATGAGTCCCATCATAGAGCAAGAGAAGGAGCTTTTGAGTTGAATGATGTTTTTGCAATAATCAATGCTGTCCCTGCTATCGCTCTCCTTAACTTTGGTTTCTTCCACAAAGGTCTCGTCCCTGGTCTTTGCTTCGGTGCGGGTCTTGGGATTACGGTGTTTGGGATGGCCTACATGTTTGTACACGACGGATTGGTTCATAAGAGATTCTCAGTGGGACCCATTGCCAATGTACCCTATTTCAGAAGGGTAGCTGCTGCCCACAAACTTCACCATTCGGACAAATTTGATGGGGTGCCATATGGGCTGTTTTTGGGACCAAAGGAACTTGAAGAGGTAGGAGGGCTAGAAGAGCTAGAAAAAGAGATAAGTAGGAGGACAAAATCATACAATAATAGTTCATGA 939 0.4121 MAVGLTATITLQPINRHYKPLFSHLQKPTPTLIFSPLRCFLHRTTTLKTQRLKNFTLCVLMEDPKQDTQMEIEAEKSPLLENNYVPQVLSQKMEEKMKRKKSERFTYLIAAVMSSLGITSMAVLAVYYRFSWQMEGSGEIPWSEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESHHRAREGAFELNDVFAIINAVPAIALLNFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFSVGPIANVPYFRRVAAAHKLHHSDKFDGVPYGLFLGPKELEEVGGLEELEKEISRRTKSYNNSS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01209 312 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 1 308 IPR045019 GO:0016491
Trre11g01209 312 Pfam Fatty acid hydroxylase 155 282 IPR006694 GO:0005506|GO:0008610|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01209 Trre-Chr11 11563551 11566646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01209 1 225 Chloroplast and Mitochondria Gene Families AT4G25700 57.018 1.62e-86 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01209 K15746 - gmx:100785541 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01209 11 11563551 11566646 Trre1g05350 1 59287917 59289948 ECH
Trre11g01209 11 11563551 11566646 Trre11g01209 11 11563551 11566646 ECH
Trre11g01209 11 11563551 11566646 Trre1g05350 1 59287917 59289948 PCT