Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01197 ATGTCATCGCCGGGATTCAATACCGGTGGTAATGGATCGTCGGAATATTTCTCCGGCAGATCAACAAACACCATCAACAACCTCACCACCACCAATAACCTCCACCATAATCTCTCTCTCTACCGATCCCACCAACAACAACAACCACTTCCTCCAATTTTTCTAGATCCTTCTTCTCAGATCCCTCAACAACGCTTCATCGGAAAACGCACCTTAGCTGAATTCCAAACCCAACAACACCAAACCTACAACATCAACAACAATCTCAACAACATCAACAACAACAACCTTAACAATAACCACGTTCTCTCAAATCTTTTACTTCGTTCTGTAAAACCAAGAACAACAAATTTTCAGTTTCAAAACAATTCTCCATCATCTTTTTCACTTCCTGAATTACAACAAAACCCTTTTAACAACTACCAAACGCACCGTTTAGGTGTTCCTTTACAAATGAACCCAAATTTTCATCACTATAGACCCACCTCGAATTTGACTCAAGTAATAAACCGGGTTCAAAATCAAACCGTTGAACCGGTAGAAGAAAAAAAGACCAACAACGATCACACGCTTCTTCAAGAATTAGAAAAACAGCTTCTAGAAGATAACGACGATGACGGTGAAGCTTCTGTTATAACAACAAGTGAATGGTCAGAGACATATCAGAATCTAATTGGGCCTGGTAATGGGCCGAGTCAGGCCCAGAAACAGGTTTCTTCATCGCCAACTGCATCTACAACGTCATCAACTTCTTCTTCGGCTGCTTCACCTGCTTCTGTTTGTTCCAAACAAACCCTAATTGAAGCTGCAAACGCTATTTCAGAAGGTAAAAACGACGTCGCTTTAGAGATCTTAACACGTTTGGTTCAGAATTTGAATCCGAATTTGATGAATTTGAATTCGGATCAACGGTTAACTAATTGCATGATTTCGGCTCTGAAATCGAGGTTGAATCCGGTTGAAAATCCACCGGTTGTTGCGGAATTGTTTGGTAGAGAACATGCTGAGTCGACTCAACTGTTGTTTGAAAACTCGGTTTGTTTCAAGGTTAGTTTCATGGCTGCGAATCTCGTGATCATGGAAGCAGCATTTGAAGATAACGGTAACGGTAACGGTAACGGAAAAGGTTTGTGTGTGGTGGATTTTGAAATTGGACAGGGGAAACAATATGTTAATCTTCTTCACGCGCTAAAAGCGCGTGAGGTTTCGGTTTCACCTGCATCGGGTTTCACGTTGAAGATAGTTGCTGTGGCGGAGAACGGCGGCGACGAGAGAGTTAAAGCGGTGGGTGAAATGTTAAGTCGTCAAGCGGAGAGGTTAAGAGTCGGTTTCGAGTTTCGTATTGCAACCGTTTCTCAGCGACAAGTGAACGAGTTAAGTCGCGAGTTATTAGGTTGTGACTCGGAAGAAACGCTTATTGTGAATTTCGCGTTTAAGCTGAATCGAATTCCAGATGAAAGTGTTTCAACGGAGAATCCACGCGACGAGCTTTTGAGGCGCGTGAAGAAACTATCCCCGCGCGTGGTTACAATTGTGGAGCAAGAAATGAATTGTAATACGGCGCCGTTTTTGGCACGTGTTGCTGAGTCGTGGTCTTATTATTCTGCTTTGTATGACTCGGTTGAGTCTGTTTTAGGAAAAGATAACTCGGACCGAGTCATGATTGAAGAAGGACTGAGTAGGAAATTAAGTAATTCGGTGGCTTGTGAAGGTAGAGATCGTGTTGAACGGTGTGAGGTTTTTGGAAAATGGCGCGCAAGGATGAGTATGGCGGGGTTTAAGCTTATACCAATGAGTCAAAACGTTGTTGAGTCAATAAAATCGCGACTCGCTGTGAGTAATAACAACCGCGTTAACACGGAACTCAGTGTGAAAGAAGAGAACGGTGGGATTTGCTTTGGTTGGATGGGAAGAACACTCACCGTTGCTTCTGCTTGGCGTTAA 1944 0.4306 MSSPGFNTGGNGSSEYFSGRSTNTINNLTTTNNLHHNLSLYRSHQQQQPLPPIFLDPSSQIPQQRFIGKRTLAEFQTQQHQTYNINNNLNNINNNNLNNNHVLSNLLLRSVKPRTTNFQFQNNSPSSFSLPELQQNPFNNYQTHRLGVPLQMNPNFHHYRPTSNLTQVINRVQNQTVEPVEEKKTNNDHTLLQELEKQLLEDNDDDGEASVITTSEWSETYQNLIGPGNGPSQAQKQVSSSPTASTTSSTSSSAASPASVCSKQTLIEAANAISEGKNDVALEILTRLVQNLNPNLMNLNSDQRLTNCMISALKSRLNPVENPPVVAELFGREHAESTQLLFENSVCFKVSFMAANLVIMEAAFEDNGNGNGNGKGLCVVDFEIGQGKQYVNLLHALKAREVSVSPASGFTLKIVAVAENGGDERVKAVGEMLSRQAERLRVGFEFRIATVSQRQVNELSRELLGCDSEETLIVNFAFKLNRIPDESVSTENPRDELLRRVKKLSPRVVTIVEQEMNCNTAPFLARVAESWSYYSALYDSVESVLGKDNSDRVMIEEGLSRKLSNSVACEGRDRVERCEVFGKWRARMSMAGFKLIPMSQNVVESIKSRLAVSNNNRVNTELSVKEENGGICFGWMGRTLTVASAWR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01197 647 Pfam GRAS domain family 263 647 IPR005202 -
Trre11g01197 647 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 233 635 IPR005202 -
Trre11g01197 647 ProSiteProfiles GRAS family profile. 253 647 IPR005202 -
Trre11g01197 647 MobiDBLite consensus disorder prediction 221 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01197 Trre-Chr11 11463322 11465265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01197 50 647 GRAS Transcription Factor Family AT5G52510 46.749 4.66e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre11g01197 GRAS 1.9e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01197 - - gmx:100808172 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01197 11 11463322 11465265 Trre11g01197 11 11463322 11465265 ECH