Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01186 ATGCAGGACTCTCTGGAATTTGTAATCCAGTGGCTTGAAAGATTCCCACGTTACAAGAATAGGGAACTTTATATAACAGGAGAGAGCTATGCAGGACACTATGTCCCTCAATTAGCTAAGGAAATCATGACATATAACATAAAAGCCAAGCAACCTATCAATCTCAAGGGCATAATGGTTGGAAATGCAGTGACAGACAACTATTATGATAACTTGGGTACAGTGACATACTGGTGGAGCCATGCAATGATATCTGATCAAACATACAAACAACTCATTAGCACTTGTGATTTTCATCACCATAAAGAATCTGATGAATGTGAATCTTTATATAGCTATGCCATGGATCAAGAATTTGGCAACATTGATCAGTACAATATCTATGCGCCTCCATGTAACCATTCCGATGGTAGCTCGTCCGGTACCGGCCACTCCATTCGGTTGCCCCACCTTCCTCATTTGGCATTTAGAAAAATGGCTGGTTATGATCCATGTACAGAAAAATATGCAGAGGTTTATTACAATAGGCCTGATGTTCAGAAAGCACTTCATGCTAACACAACTGGCATTCCTTATAAGTGGACTGCTTGCAGTGAAATTTTGAATAGAAATTGGAATGATACAGATGTATCTATTCTTCCAATTTATAGAGAATTGATAGCTCATGGAGTAAGAGTTTGGGTTTTCAGTGGGGATGTAGACTCAGTGGTTCCAGTTACAGCAACAAGATATTCACTTGCACCACTTAAGTTGGCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAAGTTGGAGGTTGGACAGAAGTGTATGAAGGGCTAACATTTGCCACAGTGAGAGGGGCAGGTCATGAAGTGCCACTATTCAAACCAAGAGCAGCCCTTCAATTGTTCAAATCATTCCTTGCAGGAAAGCCTCTTCCAAAAGGTCATGAAAGTGTTGTCTTGTATTTAATTGATAGTAAGTTAGCAACTTAA 984 0.3963 MQDSLEFVIQWLERFPRYKNRELYITGESYAGHYVPQLAKEIMTYNIKAKQPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYKQLISTCDFHHHKESDECESLYSYAMDQEFGNIDQYNIYAPPCNHSDGSSSGTGHSIRLPHLPHLAFRKMAGYDPCTEKYAEVYYNRPDVQKALHANTTGIPYKWTACSEILNRNWNDTDVSILPIYRELIAHGVRVWVFSGDVDSVVPVTATRYSLAPLKLATKIPWYPWYVKNQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLAGKPLPKGHESVVLYLIDSKLAT 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01186 327 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 2 293 IPR001563 GO:0004185|GO:0006508
Trre11g01186 327 PRINTS Carboxypeptidase C serine protease (S10) family signature 11 36 IPR001563 GO:0004185|GO:0006508
Trre11g01186 327 PRINTS Carboxypeptidase C serine protease (S10) family signature 276 289 IPR001563 GO:0004185|GO:0006508
Trre11g01186 327 Gene3D alpha/beta hydrolase 1 134 IPR029058 -
Trre11g01186 327 Pfam Serine carboxypeptidase 2 305 IPR001563 GO:0004185|GO:0006508
Trre11g01186 327 ProSitePatterns Serine carboxypeptidases, histidine active site. 276 293 IPR033124 GO:0004185
Trre11g01186 327 SUPERFAMILY alpha/beta-Hydrolases 2 310 IPR029058 -
Trre11g01186 327 Gene3D - 212 306 - -
Trre11g01186 327 Gene3D - 165 202 - -
Trre11g01186 327 FunFam Carboxypeptidase 212 306 - -
Trre11g01186 327 ProSitePatterns Serine carboxypeptidases, serine active site. 25 32 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01186 Trre-Chr11 11366084 11369143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01186 170 309 Calmodulin-binding Proteins AT2G22960 31.206 2.79e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01186 K16297 - gmx:100807680 592.038