Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g01186 | ATGCAGGACTCTCTGGAATTTGTAATCCAGTGGCTTGAAAGATTCCCACGTTACAAGAATAGGGAACTTTATATAACAGGAGAGAGCTATGCAGGACACTATGTCCCTCAATTAGCTAAGGAAATCATGACATATAACATAAAAGCCAAGCAACCTATCAATCTCAAGGGCATAATGGTTGGAAATGCAGTGACAGACAACTATTATGATAACTTGGGTACAGTGACATACTGGTGGAGCCATGCAATGATATCTGATCAAACATACAAACAACTCATTAGCACTTGTGATTTTCATCACCATAAAGAATCTGATGAATGTGAATCTTTATATAGCTATGCCATGGATCAAGAATTTGGCAACATTGATCAGTACAATATCTATGCGCCTCCATGTAACCATTCCGATGGTAGCTCGTCCGGTACCGGCCACTCCATTCGGTTGCCCCACCTTCCTCATTTGGCATTTAGAAAAATGGCTGGTTATGATCCATGTACAGAAAAATATGCAGAGGTTTATTACAATAGGCCTGATGTTCAGAAAGCACTTCATGCTAACACAACTGGCATTCCTTATAAGTGGACTGCTTGCAGTGAAATTTTGAATAGAAATTGGAATGATACAGATGTATCTATTCTTCCAATTTATAGAGAATTGATAGCTCATGGAGTAAGAGTTTGGGTTTTCAGTGGGGATGTAGACTCAGTGGTTCCAGTTACAGCAACAAGATATTCACTTGCACCACTTAAGTTGGCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAAGTTGGAGGTTGGACAGAAGTGTATGAAGGGCTAACATTTGCCACAGTGAGAGGGGCAGGTCATGAAGTGCCACTATTCAAACCAAGAGCAGCCCTTCAATTGTTCAAATCATTCCTTGCAGGAAAGCCTCTTCCAAAAGGTCATGAAAGTGTTGTCTTGTATTTAATTGATAGTAAGTTAGCAACTTAA | 984 | 0.3963 | MQDSLEFVIQWLERFPRYKNRELYITGESYAGHYVPQLAKEIMTYNIKAKQPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYKQLISTCDFHHHKESDECESLYSYAMDQEFGNIDQYNIYAPPCNHSDGSSSGTGHSIRLPHLPHLAFRKMAGYDPCTEKYAEVYYNRPDVQKALHANTTGIPYKWTACSEILNRNWNDTDVSILPIYRELIAHGVRVWVFSGDVDSVVPVTATRYSLAPLKLATKIPWYPWYVKNQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLAGKPLPKGHESVVLYLIDSKLAT | 327 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g01186 | 327 | PANTHER | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE | 2 | 293 | IPR001563 | GO:0004185|GO:0006508 | |
Trre11g01186 | 327 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 11 | 36 | IPR001563 | GO:0004185|GO:0006508 | |
Trre11g01186 | 327 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 276 | 289 | IPR001563 | GO:0004185|GO:0006508 | |
Trre11g01186 | 327 | Gene3D | alpha/beta hydrolase | 1 | 134 | IPR029058 | - | |
Trre11g01186 | 327 | Pfam | Serine carboxypeptidase | 2 | 305 | IPR001563 | GO:0004185|GO:0006508 | |
Trre11g01186 | 327 | ProSitePatterns | Serine carboxypeptidases, histidine active site. | 276 | 293 | IPR033124 | GO:0004185 | |
Trre11g01186 | 327 | SUPERFAMILY | alpha/beta-Hydrolases | 2 | 310 | IPR029058 | - | |
Trre11g01186 | 327 | Gene3D | - | 212 | 306 | - | - | |
Trre11g01186 | 327 | Gene3D | - | 165 | 202 | - | - | |
Trre11g01186 | 327 | FunFam | Carboxypeptidase | 212 | 306 | - | - | |
Trre11g01186 | 327 | ProSitePatterns | Serine carboxypeptidases, serine active site. | 25 | 32 | IPR018202 | GO:0004185 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g01186 | Trre-Chr11 | 11366084 | 11369143 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g01186 | 170 | 309 | Calmodulin-binding Proteins | AT2G22960 | 31.206 | 2.79e-16 | 73.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g01186 | K16297 | - | gmx:100807680 | 592.038 |