Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01180 ATGGCTTTCGATTTAGTAGGAACTTTGATTTCACAACTTACACCTTATGTCCAAGAAGAGTATGCAATATTTAAAGATGTTAACAAACATGCTGAAAAACTATCAAGTAATCTCACTGCTATTCATGCTGTCCTACAAGATGCTGAGGAGAAGCAAATCACAAGTCGTGCTGTCAAAGATTGGCTGCAAAAGCTGACTGATGCAGCACATGTTCTTGATGATATATTGGACGAATGTTCAATATTTTCTGAAGAAAACAGAGACAAACACTCCATCATCCATCCTAAGAAGCTGTATGCTCGCCGTAGCATTGGAAAGAAGATGAAAAATGTTGCTGAAAGGATTGATGCTATTGCTGAAGAAAGGGTCAAGTTTGGATTAAATCCCGGAACCATGGAGCATCGTCTTGACAACGATACTGGGTTTTGTTTAGCAGAGCTACATAACTTACAACTAGGAGGCAAGCTACACATCAAAGGCCTTGAGAATGTGTCGAATGAAACAGATGCTAGAGAAGCTAATTTAATTGGTAAGAAGGAATTAAGTCAATTAACCTTGTCATGGGGTACTGATGCTAATTCACAAGTTAGCTTTACTAGCGCTGAGCAAGTCCTTGAAGCCCTTGAGCCTCACACAGGTCTCAAATATTTTGGGATGAATGGTTATAAGGGAATAAATATTCCAAATTGGATGAGAAATACTTCTATTTTAGAATGCTTGGTTGAGGTTAAACTTTCTAAATGCAGAAATTTTGTGCGGCTTCCTCCACTTGGTAAATTACCATGTTTAACAACTCTTCATGTGTCTAGAATGAGAGAATTGAAGTACATTGATGATGACTTGTATGAAGGTGCGACGAAGAAGGCTTTTCCATCATTAAAGAAAATGGTGTTGTATGATTTACCAAATTTAGAGAGGGTGTTGAAAGCTGAAGGAGTAGAGATGCTATCACAACTTTCTGATCTGCACATAGAAGGGGTCACTAAGCTTGCATTTCCATCCCTTCCATCTGTTGGCTCTTTTGATGCTACTGGGAATACCGAAAGTGATTCTATTGATGGTGGTGCATCTTTCCTGAGGCGAATTGCAGCTAGTATGCATAATCTCAAAAAATTTGAGATTAATTACTTTGATGAACTGAAGGTACTACCTAATGAACTCAACTCTCTCAGTTCCCTACAACAACTACACATTACAGGTTGTGATAAGCTTGAGTCCATCCCCGAGTGTGTACTGCAAGGTTTGTGTTCTCTTCAAGTTTTGAAATTTTCATATTGCAGTAGCTTAAAATCCTTGTCGGAAGCTACTATGAACAAGCTAACTTTCCTTCGTGAATTGGTAATCAAAGGTGGATATGAAAATGAAACTTTACCAAATGGCTTAGAAGGTATCCCCTCACTTCAAATTTTGTCTTTGTCAGAATTTCCTTCTCTTGTAACATTGCCAGACTGGTTGGGAACCATGACTTCTCTTCAAACATTAGATATCTATGATTGTCCCAAATTAAGCTCATTACCAGACTGCTTTAAAGAACTCACAAACTTGCATGAATTACACATCATTAGATGTCCTAAGCTGGAGAAGCGATGCAAGAAAGAAACAGGGGAAGATTGGCATAAGATAGCTCATGTACCCAGGTTGGATATAAAATCTACTGAACCCAAACCATTAATTTACGAGGAAGTGAAGGCAATATGGTACAAGTCCAAGCCATTCTGGCGTTCCCAAGATTTGGATTTTGATGATTTTGTTCATTATGTAAGAAATTAA 1770 0.3819 MAFDLVGTLISQLTPYVQEEYAIFKDVNKHAEKLSSNLTAIHAVLQDAEEKQITSRAVKDWLQKLTDAAHVLDDILDECSIFSEENRDKHSIIHPKKLYARRSIGKKMKNVAERIDAIAEERVKFGLNPGTMEHRLDNDTGFCLAELHNLQLGGKLHIKGLENVSNETDAREANLIGKKELSQLTLSWGTDANSQVSFTSAEQVLEALEPHTGLKYFGMNGYKGINIPNWMRNTSILECLVEVKLSKCRNFVRLPPLGKLPCLTTLHVSRMRELKYIDDDLYEGATKKAFPSLKKMVLYDLPNLERVLKAEGVEMLSQLSDLHIEGVTKLAFPSLPSVGSFDATGNTESDSIDGGASFLRRIAASMHNLKKFEINYFDELKVLPNELNSLSSLQQLHITGCDKLESIPECVLQGLCSLQVLKFSYCSSLKSLSEATMNKLTFLRELVIKGGYENETLPNGLEGIPSLQILSLSEFPSLVTLPDWLGTMTSLQTLDIYDCPKLSSLPDCFKELTNLHELHIIRCPKLEKRCKKETGEDWHKIAHVPRLDIKSTEPKPLIYEEVKAIWYKSKPFWRSQDLDFDDFVHYVRN 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01180 589 CDD RX-CC_like 6 120 IPR038005 -
Trre11g01180 589 Gene3D - 5 120 - -
Trre11g01180 589 Coils Coil 31 51 - -
Trre11g01180 589 Pfam Rx N-terminal domain 5 90 IPR041118 -
Trre11g01180 589 SUPERFAMILY L domain-like 200 358 - -
Trre11g01180 589 SUPERFAMILY RNI-like 320 527 - -
Trre11g01180 589 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 141 333 - -
Trre11g01180 589 Gene3D Ribonuclease Inhibitor 362 536 IPR032675 -
Trre11g01180 589 Gene3D Ribonuclease Inhibitor 142 350 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01180 Trre-Chr11 11315492 11319056 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01180 364 522 WRKY Transcription Factor Family AT4G12020 28.415 4.21e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01180 - - mtr:11442828 427.172