Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01179 ATGGATCCTAATGGTTCTATTGATGATAAGTGTGACAATAGACTCTACATTGGCAATCTTGATCTTAGAATTACAGAAGCTGCTCTACTCAGAATGTTTAATCCATATGGAAAGATCGTGTCCGAGGACTTCCTCTGGCACACTCGTGGCCCAAAACGTGGGGAACCTCGAGGATTCGCTTTTATACAGTATAGCACAAAAGAGGAAGCAATATTGGCCAAGGAGAAAATGCACGGGAAGCTAGCTTGCGGCCGGCCGTTGGTTGTACGCCTTGCAAGTGAGAGATACGCGCTGGAAACACCCGCTAGCTCTACAAAAGCAGTTGGTGAAGGGCACAAGTTGCATCTCACTGGCGGTGGCTCAGGACAGACAAGCCGTGGTGCGAAAATTGCTGCAATAAAGAACAAGTTGAAGTCTTTAGAGGAAGATAACTCTAGGAACAAGAAACAGAAGCAGAGTGACAATGTATCTTGA 474 0.4599 MDPNGSIDDKCDNRLYIGNLDLRITEAALLRMFNPYGKIVSEDFLWHTRGPKRGEPRGFAFIQYSTKEEAILAKEKMHGKLACGRPLVVRLASERYALETPASSTKAVGEGHKLHLTGGGSGQTSRGAKIAAIKNKLKSLEEDNSRNKKQKQSDNVS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01179 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Trre11g01179 157 CDD RRM_RBM18 14 93 IPR039157 -
Trre11g01179 157 Gene3D - 10 108 IPR012677 -
Trre11g01179 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Trre11g01179 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 51 149 - -
Trre11g01179 157 Coils Coil 130 150 - -
Trre11g01179 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
Trre11g01179 157 MobiDBLite consensus disorder prediction 135 150 - -
Trre11g01179 157 MobiDBLite consensus disorder prediction 100 157 - -
Trre11g01179 157 SUPERFAMILY RNA-binding domain, RBD 7 96 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01179 Trre-Chr11 11309820 11311323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01179 15 95 Eukaryotic Initiation Factors Gene Family AT3G16380 37.037 6.66e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01179 K24527 - gmx:100804800 256.529