Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01139 ATGGCCAATAATGATTGGGATCTCTATTCCATTTTGCCGAGCAATAAAGTTACCACCTTTACTAATCCTATGACAATTTTTGGAGCTTCATCTCCATCTCAAACTTCAACCACCATAACTAGCACCACTAGCATAGTTCCAGCTCAAAACACCACTACATCTTACTTTAATGATTTCAATCTTACCCATGAAAATAGCACAGTCTCATTATTCTCACCCATGCCAGATGATTTCGTAGATTTTGAACTATTAAAAATCCGCTTCAATCACAACTCCACCATCTCGACACCAATCACCACTATGCACAACCCCACCATCAACCCCTTAACTACCCCCACCACCATTATTCCGACTATTATTACCCCTGCCCACTCCACCCTTATCCCCACGCCCTCTTGCCCCACTACCATCAACACCAACACTAATTTTCTCACCCATATCACTACCACATCTGCCATCACTAATACTAGTGTCCAGTACCCCAACAAAAATTATACCTTTTTTGATTATCCAATAACCATTGACCAAGAAGAAATGCAATCCAAATACAATTCCACCACCGCCACAACCACCACCTTCCCCACCACCACTACCAATGCCTTCACAATCCCCACCCTCACAACCACTATCCCCAACCAGACCACCACCATCACCACCAGTATCCCTCCTATTACAACTATGACTGACACAATCACTAGTTTTCGTGGTACCAATCAAAATGCTATCTTTTCTGATTTTCCAATATTGATCAACCAACAACAAATTCAACAAAACCACAAAAATCAAGTTTTTGTTCCTTATTCTTGCACCAAAATCACAACTACTCCTTTTGATGGAACATACAACCACCCATTAGTTCTACAACAACCAATAGAACATCCACAACAACCAAAGCCCAAATCAAGGAAAAGAATTTATAAATTTAGGGAGACAATAGAGTGCCATGTCAATGAAGATGAACTATCAAAAGATTTGTGCTCATGGAGAAAATATGGAGAAAAAACCATTAAAGGGTCTCCACATCGAAGGAGCTACTACAAATGTTCCAGTTTCAAAGATTGTCCTGCAAGAAAACTAGTAGAAAAAAGCAAAACCAACGAGAATATTTATGTTGTGACTTTTGAAGGAGTGCACAACCATGAGCTTAGCTAA 1152 0.4002 MANNDWDLYSILPSNKVTTFTNPMTIFGASSPSQTSTTITSTTSIVPAQNTTTSYFNDFNLTHENSTVSLFSPMPDDFVDFELLKIRFNHNSTISTPITTMHNPTINPLTTPTTIIPTIITPAHSTLIPTPSCPTTINTNTNFLTHITTTSAITNTSVQYPNKNYTFFDYPITIDQEEMQSKYNSTTATTTTFPTTTTNAFTIPTLTTTIPNQTTTITTSIPPITTMTDTITSFRGTNQNAIFSDFPILINQQQIQQNHKNQVFVPYSCTKITTTPFDGTYNHPLVLQQPIEHPQQPKPKSRKRIYKFRETIECHVNEDELSKDLCSWRKYGEKTIKGSPHRRSYYKCSSFKDCPARKLVEKSKTNENIYVVTFEGVHNHELS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01139 383 Gene3D WRKY domain 309 382 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre11g01139 383 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 195 381 IPR044810 GO:0003700
Trre11g01139 383 Pfam WRKY DNA -binding domain 324 381 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g01139 383 SMART WRKY_cls 322 382 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g01139 383 SUPERFAMILY WRKY DNA-binding domain 318 381 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre11g01139 383 ProSiteProfiles WRKY domain profile. 317 383 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01139 Trre-Chr11 10869700 10871596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01139 300 380 WRKY Transcription Factor Family AT5G52830 55.556 2.84e-23 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre11g01139 WRKY 9.8e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01139 - - tpra:123904753 330.872