LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g01114	ATGGCGGGTGCTACCGGAAGAACTCTCTTCACTCTCTCTTCTTCTCTCACTACACGCATTTCTCGTCATGGAAACCGCTTCTCATTCCTCACACTCTCAAATCCATTAACCCTTCTTCCACGATTCAGACCACTCTGTTCCATAACCGCCACACCCGAACCCTTATTAGACACTGATACAGAAAAACACTCGATTCTTCTCGAGAAGCTCAGAGTGAGACACCTAAAAGGAACAGGAACTAGTAGTAGTAATAGTAGTAAGAAAGTTTCTGAAATTGTGAAGAAAAATGAGGTGAAGAAGAAAGTTGTTGTTGTTGATGAAGTTGTTGAGAGTTTTGATAAATTGGGAATTAGTGATGAGGTTATGGGTGCTGTTAAAGAAATTGATATTGAAGTTCCTACTGAGATTCAGTGTATTGGTATTCCTGCTATTTTGGATGGTAAAAGTGTTGTTTTAGGGTCTCATACTGGTTCTGGAAAAACTCTTGCTTATTTGCTTCCACTTGTTCAGTTGTTAAGACGGGATGAGCAATTGAACGGAATAGTGCTGAAGCCCAAGCGTCCCCGAGCTGTTGTGCTATGTCCTACAAGGGAGTTGTCTGAGCAGGTTTTCCGAGTTGCTAAGTCGATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGTCTTAGGCCTCAGGAAGATTCACTTAGTAACCCTGTCGATATGGTAGTTGGTACCCCTGGCAGGATTCTTCAACATATTGAGGAGGGAAATATGGTATATGGTGACATCAAATACGTGGTATTAGATGAGGCTGACACGATGTTTGATCGAGGCTTTGGTCCTGATATTCGCAAATTCCTGGCCCCATTAAAACACCGTGCTTCAAAACCTGATAGCCTTGGTTTCCAGACTGTTTTGGTCACTGCGACCATGACAAAGGCTGTGCAAGATCTGGTTGATGAGGAGTTTCAAGGCATTGTCCATCTGCGCACATCCACATTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTCTTAAACTTTCTGGTACTGAGAACAAGCTGGATGCATTACTTCAGGTATTAGAGCCAAGTCTTGCAAAAGGTAACAGGGTAATGGTTTTCTGCAACACATTAAATTCTAGCCGTGCTGTGGATCACTTTCTTGGTGAAAATCAGATTTCTACCGTGAATTACCATGGGGAGGTACCGGCGGAGCAAAGGGTTGAAAACCTCAACAAGTTTAAGAGTAACAGTGAAGATTGCCCTACATTGGTTTGCACGGATTTGGCTGCTAGGGGTCTGGACTTGGATGTAGATCATGTTATCATGTTTGACTTCCCTTTGAATTCTATCGACTACCTCCATCGCACAGGTAGAACTGCTCGTATGGGAGCAAAAGGGAAAGTAACGAGTTTGGTTACTAAAAAGGACTATAGCTTGGCAACCAAGATAGAGGAGGCAATAAGAAAGAATGAGAGTTTGGAGGCTATTACTAAAGAAAGTGTCCGAATGGATGTAACCAGGAACCAAATCACTGAGCAGAGAAGGAAGAACAAAAATGGGTTTAAAACTTCAAAAGTTAGGGACAAATCTGATTCTCGTGCAAGTCCTGTGAATACCAGGTCACGTATTAAGGATAGATCTGATTCTCGCACCCGTTCTGAGAATACCAGGTCAGGTAGTAGAGACAAATCTGATTCTCGCACCCGCTATGAGAATACCAGGTCAGGTAGTAGGGACAAATCTGATTCTCGCACCCGTTCTGAGAATACCAGGTCAGGTAGTAGGGATAAATCTGATTCTCGCACCCGTTCTGAGAATACCAGGTCAGGTAGTAGGGATAAATTTGATTCTCGCACCCGTTCTGAGAATACCAGGCCAGGTACGAAATCTGGTAAACAATCAGCGTCCTCAAAGTTTAAGAAGAATGGATTTCCCGTTTCAAAACCTGTAAAATCTTCCAAGACAGGTAGCTTAAAAAAAGATTCTTCAGAGAATAAGCGAACGGATAAAAGGACCACTGCCACCAAATCTACAGATTCTAAACTTAGTGTTGTTGGGTTTAGGGGGCGGAATGCATCATCCTCAGATAAGAGACAAACATATTAG	2109	0.4291	MAGATGRTLFTLSSSLTTRISRHGNRFSFLTLSNPLTLLPRFRPLCSITATPEPLLDTDTEKHSILLEKLRVRHLKGTGTSSSNSSKKVSEIVKKNEVKKKVVVVDEVVESFDKLGISDEVMGAVKEIDIEVPTEIQCIGIPAILDGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGIVLKPKRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLSNPVDMVVGTPGRILQHIEEGNMVYGDIKYVVLDEADTMFDRGFGPDIRKFLAPLKHRASKPDSLGFQTVLVTATMTKAVQDLVDEEFQGIVHLRTSTLHKKISSARHDFLKLSGTENKLDALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAEQRVENLNKFKSNSEDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDYSLATKIEEAIRKNESLEAITKESVRMDVTRNQITEQRRKNKNGFKTSKVRDKSDSRASPVNTRSRIKDRSDSRTRSENTRSGSRDKSDSRTRYENTRSGSRDKSDSRTRSENTRSGSRDKSDSRTRSENTRSGSRDKFDSRTRSENTRPGTKSGKQSASSKFKKNGFPVSKPVKSSKTGSLKKDSSENKRTDKRTTATKSTDSKLSVVGFRGRNASSSDKRQTY	702

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g01114	702	SMART	ultradead3	129	338	IPR014001	-
	Trre11g01114	702	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	110	138	IPR014014	GO:0003724
	Trre11g01114	702	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	353	505	IPR001650	-
	Trre11g01114	702	SMART	helicmild6	382	464	IPR001650	-
	Trre11g01114	702	Pfam	DEAD/DEAH box helicase	134	317	IPR011545	GO:0003676\|GO:0005524
	Trre11g01114	702	MobiDBLite	consensus disorder prediction	678	702	-	-
	Trre11g01114	702	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	141	476	IPR027417	-
	Trre11g01114	702	Gene3D	-	74	329	IPR027417	-
	Trre11g01114	702	Gene3D	-	338	569	IPR027417	-
	Trre11g01114	702	MobiDBLite	consensus disorder prediction	655	677	-	-
	Trre11g01114	702	MobiDBLite	consensus disorder prediction	507	702	-	-
	Trre11g01114	702	MobiDBLite	consensus disorder prediction	627	642	-	-
	Trre11g01114	702	CDD	DEADc	121	320	-	-
	Trre11g01114	702	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	64	501	-	-
	Trre11g01114	702	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	141	328	IPR014001	-
	Trre11g01114	702	CDD	SF2_C_DEAD	351	473	-	-
	Trre11g01114	702	Pfam	Helicase conserved C-terminal domain	353	464	IPR001650	-
	Trre11g01114	702	MobiDBLite	consensus disorder prediction	509	626	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g01114	Trre-Chr11	10605083	10612209	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g01114	107	486	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.646	1.23e-40	152

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g01114	-		-	psat:127127975	1082.78