Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01107 ATGCATCTCTTGCGCGGATTTCATTGCTCAAGAAGAGAAGCTGAAATTTTTTGTACCTCCCTCCCCCAAATGTTGTTTGCACCTCCTCCTAACGAGCTCCATGGTGCATTGTCTAACAAGTCACTTGCTTCAACTTTGGCTTCTTCACCACCGGAAATTCAACATATGCGGTATATGTTGCGTGAACATTTATTTCCGTTAGTAAGTAGTCTTGCATCAAATAATCAGGCTGCGAAGGTCACGGAAATGTTGCTGGAAATGGACCAGGCAGAGGTAATCCATTTGATTGAGTCACCTGAAGAATTGAAGATAAAGGTGTCCGAGGCAATGCAGGTCCTTCGCGATGCTTCACCAAGTTCTGAAGCTGGCGATAGCATTATAACTGAATGA 390 0.441 MHLLRGFHCSRREAEIFCTSLPQMLFAPPPNELHGALSNKSLASTLASSPPEIQHMRYMLREHLFPLVSSLASNNQAAKVTEMLLEMDQAEVIHLIESPEELKIKVSEAMQVLRDASPSSEAGDSIITE 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01107 129 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 40 118 IPR002004 GO:0003723
Trre11g01107 129 SUPERFAMILY PABC (PABP) domain 22 122 IPR036053 GO:0003723
Trre11g01107 129 Pfam Poly-adenylate binding protein, unique domain 54 113 IPR002004 GO:0003723
Trre11g01107 129 Gene3D - 35 117 - -
Trre11g01107 129 SMART poly_2 50 116 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01107 Trre-Chr11 10545379 10546387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01107 41 123 Eukaryotic Initiation Factors Gene Family AT1G49760 56.627 2.23e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01107 K13126 - mtr:120577875 114.005