Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01101 ATGGCGGCTGTTTCATCATATAAGAAGACGGTTCTGGTTCCGGCAGCTTTGAACATCACCAAACGATTTGAGAATGCGTCTTTGTATGTTGGTGACCTCGATGTGAACGTTAATGAAGCTCAGCTTTATGATCTATTCGGTCAGATTGGTCAAGTGGTTTCAATTAGGGTTTGTAGGGATCATGTCACACAATCATCTCTTGGCTATGCTTATGTGAACTTCTATAATTCCAATGATGCTGTTATTGCGATGGAACATCTGAACTTCACTCCCTTGAATGGGAAGCCCATCCGTATTATGTTTTCTCATCGAGATCCTAGCATTCGGAAAAGTGGATTTGCAAATGTGTTTATCAAGAATCTGGACACGTCAATAGACAACAAGGCTCTGCACGATACTTTTGCTTCCTTTGGGACTGTACTTTCGTGTAAGATAGCCCTTGATTGCAATGGTCAATCAAGGGGGTTTGGATTTGTCCAATTCGACAATGATGTGTCTGCACAAAATGCTATTGAAAAACTGGATGGAATGTTGATAAACGAAAAGAAGGTTTATGTAGGGCTTTTTATTCGACACCAAGAAAGGTCCGGAAAAGGATCCGCTAATTTCACTAATGTATATGTCAAGAACTTCTCTGGGACATACACTGATGAAGACCTTAAGAAGCTATTCGACACTTTTGGTGTAATAACAAGTGCTGTTGTCATGAAAGATGACAGTGGAAACTCTAAATGCTTTGGATTTGTTAATTTCCAAAGCTCGGATGCAGCAGCTGCTGCAGTTGAGCGGTTGAACGGTACCAGTACTAATGAGGACAAGATTTTATTTGTTGGGAGGGCTCAACGAAAAACTGAAAGAGTGGCTGAGCTAAAGGCCAAATTCGAACAAGAAAAGATGAGGAGATATGAAAAATTGAAAGGTGCTAATTTATACATCAAAAACCTTGAAGACAATATCAATGATGAAAAGTTGAAGGAGTTATTTTCAGAATTTGGAACAATAAAGTCCTGCAAGGTGATGCTTGATGTCCTTGGCAATAGCAAGGGCTACGGTTTTGTTGCGTTTTCGACACCAGAGCAAGCAAGTAAAGCTATGAGTGCAATGCATGGAAAGGTAATTGGACAAAAGCCCCTATTTGTTGCTGTCGCTGAGCGCAAAGAAGAAAGAAAAGCGCGTTTGCAAGCTCTATTTTCTCAATTTCAAACACCGGGTGGAATCGCATCTCTGCATACTGGAATTGTGGAATATCATCCGGGTTTCATGTCGCCTCAACAATTTTATTTTGGTCAAGATACAGCTGGTTTCATGTCGCCTCAGCCGACTGGTGGATATGGTTTCCAACAACCATTTATGTCAAGTGTAGGATCTGACATTGCTCCAAATTTCATCATGCCATACCACCATCAGAGACAAGGTCATCCTAGGCATAGGGTCACTGGACATCGAGTTGGTAACTTCGAACATATGCAGCAGAATCAGACGCCAAATCGTAATATTGGTAGAAATGAGAGGAATCGACAAGTAGTTCTTGCACTTCCTGCTCACAATGAGCTCCATGGTGCATTGTCTAACAAGTCACTTGCTTCAACTTTGGCTTCTTCACCACCGGAAATTCAACATACGATGTTACGTGAACATTTATTTCCGTTAGTAAGTCGTCTTGCATCAAATAATCAGGCTGCGAAGGTCACGGAAATGTTGCTGGAAATGGACCAGGCAGAGGTAATCCATTTGATTGAGTCACCTGTAGAATTGAAGATAAAGGTGTCTGAGGCGATGCAGGTCCTTCGCGATGCTTCACCAAGTTCTGAAGCTGGCGATAGCATTATAACTGAATGA 1839 0.4165 MAAVSSYKKTVLVPAALNITKRFENASLYVGDLDVNVNEAQLYDLFGQIGQVVSIRVCRDHVTQSSLGYAYVNFYNSNDAVIAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDTSIDNKALHDTFASFGTVLSCKIALDCNGQSRGFGFVQFDNDVSAQNAIEKLDGMLINEKKVYVGLFIRHQERSGKGSANFTNVYVKNFSGTYTDEDLKKLFDTFGVITSAVVMKDDSGNSKCFGFVNFQSSDAAAAAVERLNGTSTNEDKILFVGRAQRKTERVAELKAKFEQEKMRRYEKLKGANLYIKNLEDNINDEKLKELFSEFGTIKSCKVMLDVLGNSKGYGFVAFSTPEQASKAMSAMHGKVIGQKPLFVAVAERKEERKARLQALFSQFQTPGGIASLHTGIVEYHPGFMSPQQFYFGQDTAGFMSPQPTGGYGFQQPFMSSVGSDIAPNFIMPYHHQRQGHPRHRVTGHRVGNFEHMQQNQTPNRNIGRNERNRQVVLALPAHNELHGALSNKSLASTLASSPPEIQHTMLREHLFPLVSRLASNNQAAKVTEMLLEMDQAEVIHLIESPVELKIKVSEAMQVLRDASPSSEAGDSIITE 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01101 612 SMART rrm2_1 27 100 IPR003954 GO:0003676
Trre11g01101 612 SMART rrm2_1 205 277 IPR003954 GO:0003676
Trre11g01101 612 SMART rrm2_1 115 187 IPR003954 GO:0003676
Trre11g01101 612 SMART rrm2_1 309 381 IPR003954 GO:0003676
Trre11g01101 612 FunFam Polyadenylate-binding protein 5 108 - -
Trre11g01101 612 CDD RRM2_I_PABPs 112 187 IPR045305 -
Trre11g01101 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 282 IPR000504 GO:0003723
Trre11g01101 612 Gene3D - 199 305 IPR012677 -
Trre11g01101 612 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 523 601 IPR002004 GO:0003723
Trre11g01101 612 SUPERFAMILY PABC (PABP) domain 460 605 IPR036053 GO:0003723
Trre11g01101 612 Coils Coil 280 300 - -
Trre11g01101 612 Gene3D - 306 408 IPR012677 -
Trre11g01101 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 385 IPR000504 GO:0003723
Trre11g01101 612 SMART poly_2 535 599 IPR002004 GO:0003723
Trre11g01101 612 CDD RRM3_I_PABPs 203 283 - -
Trre11g01101 612 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 26 597 IPR006515 GO:0003723
Trre11g01101 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Trre11g01101 612 CDD RRM1_I_PABPs 27 106 IPR034364 -
Trre11g01101 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 378 IPR000504 GO:0003723
Trre11g01101 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Trre11g01101 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Trre11g01101 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 273 IPR000504 GO:0003723
Trre11g01101 612 SUPERFAMILY RNA-binding domain, RBD 306 399 IPR035979 GO:0003676
Trre11g01101 612 FunFam Polyadenylate-binding protein 109 195 - -
Trre11g01101 612 Gene3D - 14 107 IPR012677 -
Trre11g01101 612 SMART rrm1_1 205 278 IPR000504 GO:0003723
Trre11g01101 612 SMART rrm1_1 115 187 IPR000504 GO:0003723
Trre11g01101 612 SMART rrm1_1 27 100 IPR000504 GO:0003723
Trre11g01101 612 SMART rrm1_1 309 381 IPR000504 GO:0003723
Trre11g01101 612 FunFam Poly(A) binding protein cytoplasmic 1 like 300 389 - -
Trre11g01101 612 Gene3D - 521 600 - -
Trre11g01101 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Trre11g01101 612 Pfam Poly-adenylate binding protein, unique domain 531 596 IPR002004 GO:0003723
Trre11g01101 612 PANTHER RNA BINDING PROTEIN 25 88 - -
Trre11g01101 612 SUPERFAMILY RNA-binding domain, RBD 200 290 IPR035979 GO:0003676
Trre11g01101 612 Gene3D - 108 198 IPR012677 -
Trre11g01101 612 Coils Coil 305 325 - -
Trre11g01101 612 SUPERFAMILY RNA-binding domain, RBD 25 193 IPR035979 GO:0003676
Trre11g01101 612 CDD RRM4_I_PABPs 307 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01101 Trre-Chr11 10510856 10513938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01101 25 603 Eukaryotic Initiation Factors Gene Family AT1G71770 51.545 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01101 K13126 - gmx:100783163 754.207