Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01097 ATGCACGGCATGTTCAAGGACAATGACCCTCATCTACCTATTGTACCAGGCTATGATGTTGCTGGCATAGTAATCAAAGTGGGAAGTAAAGTGGAGAAATTTAAGGTTGGAGATGAAATATATGGTGACATCAATGAAACAGGACTTTCAAACTTAAAGATTCTTGGAACTTTGTCAGAGTATACTATTGCTGAAGAGAGATTATTGGCTCATAAGCCAAAGAATTTAAGCTTCATTGAAGCTGCTAGTATTCCTTTAGCTATGGAAACAGCTTATGAAGGACTTGAGAGAGTTGGACTTTCTGCTGGGAAGTCTATTCTTGTTTTGGGAGGTGCTGGTGGAGTTGGTAGCTATGTTATTCAGCTGGCCAAGCATGTTTATGGTGCATCTAAGATAGCAGCAACTTCTAGCACTGGAAAAATCGAATTTTTGAGGAAGTTGGGTGTTGACTTGCCTATTGATTATACCAAAGAGAACTTTGAAGATCTCCCAGATAAGTTTGATGTAGTGTATGATTTAGTAGGGGAAGCTGATAGGGCTGTGAAGGCAATTAAGGAAGGTGGCAAAATTGTGTCAATAGTACCTCCTGGATTTCCACCAGCTATATTTTTTGTGCTTACTTCTAAGGGCTCTATCTTAGAGAAGTTAAGACCATACTTTGAAAGTGGTCAATTGAAGCCAATTATTGACCCCAAGACACCACTACCATTTTCTGAGGTCATTGAAGCCTTTTCCTACTTAGAAACCTCAAGGGCCCTGGGAAAAGTGGTCATTCACCCCATTCCATGA 789 0.403 MHGMFKDNDPHLPIVPGYDVAGIVIKVGSKVEKFKVGDEIYGDINETGLSNLKILGTLSEYTIAEERLLAHKPKNLSFIEAASIPLAMETAYEGLERVGLSAGKSILVLGGAGGVGSYVIQLAKHVYGASKIAATSSTGKIEFLRKLGVDLPIDYTKENFEDLPDKFDVVYDLVGEADRAVKAIKEGGKIVSIVPPGFPPAIFFVLTSKGSILEKLRPYFESGQLKPIIDPKTPLPFSEVIEAFSYLETSRALGKVVIHPIP 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01097 262 Gene3D - 2 258 - -
Trre11g01097 262 SMART PKS_ER_names_mod 3 258 IPR020843 GO:0016491
Trre11g01097 262 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 103 124 IPR002364 GO:0008270|GO:0016491
Trre11g01097 262 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 1 262 IPR044626 GO:0016628
Trre11g01097 262 Gene3D - 95 209 - -
Trre11g01097 262 Pfam Zinc-binding dehydrogenase 147 258 - -
Trre11g01097 262 Pfam Alcohol dehydrogenase GroES-like domain 8 42 IPR013154 -
Trre11g01097 262 CDD MDR_like_2 1 258 - -
Trre11g01097 262 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 75 197 IPR036291 -
Trre11g01097 262 SUPERFAMILY GroES-like 9 108 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01097 Trre-Chr11 10484862 10486968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01097 13 199 Monolignol Biosynthesis Gene Families AT4G37980 24.885 2.29e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01097 K18980 - gmx:100788619 436.802