Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01096 ATGGCAACAACAGAAGCTTCAATCACTTATCCAACTATTACTATTCCAACTCATACAAAAGCTTGGTTCTATTCTGAACATGGAAAACCATCAGATGTTCTAAAGTTACATCCTAATTGGTCTATACCACAACTCAAAGATGATCAAGTCCTCATTAAGGTTGTTGCTGCTTCCCTTAATCCTGTTGATTACAAGAGGATGCACGGCATGTTCAAGGACAATGACCCTCATCTACCTATTGTACCAGGCTATGATGTTGCTGGCATAGTAATCAAAGTGGGAAGTAAAGTGGAGAAATTTAAGGTTGGAGATGAAATATATGGTGACATCAATGAAACAGGACTTTCAAACTTAAAGATTCTTGGAACTTTGTCAGAGTATACTATTGCTGAAGAGAGATTATTGGCTCATAAGCCAAAGAATTTAAGCTTCATTGAAGCTGCTAGTATTCCTTTAGCTATGGAAACAGCTTATGAAGGACTTGAGAGAGTTGGACTTTCTGCTGGGAAGTCTATTCTTGTTTTGGGAGGTGCTGGTGGAGTTGGTAGCTATGTTATTCAGCTGGCCAAGCATGTTTATGGTGCATCTAAGATAGCAGCAACTTCTAGCACTGGAAAAATCGAATTTTTGAGGAAGTTGGGTGTTGACTTGCCTATTGATTATACCAAAGAGAACTTTGAAGATCTCCCAGATAAGTTTGATGTAGTGTATGATTTAGTAGGGGAAGCTGATAGGGCTGTGAAGGCAATTAAGGAAGGTGGCAAAATTGTGTCAATAGTACCTCCTGGATTTCCACCAGCTATATTTTTTGTGCTTACTTCTAAGGGCTCTATCTTAGAGAAGTTAAGACCATACTTTGAAAGTGGTCAATTGAAGCCAATTATTGACCCCAAGACACCACTACCATTTTCTGAGGTCATTGAAGCCTTTTCCTACTTAGAAACCTCAAGGGCCCTGGGAAAAGTGGTCATTCACCCCATTCCATGA 987 0.3961 MATTEASITYPTITIPTHTKAWFYSEHGKPSDVLKLHPNWSIPQLKDDQVLIKVVAASLNPVDYKRMHGMFKDNDPHLPIVPGYDVAGIVIKVGSKVEKFKVGDEIYGDINETGLSNLKILGTLSEYTIAEERLLAHKPKNLSFIEAASIPLAMETAYEGLERVGLSAGKSILVLGGAGGVGSYVIQLAKHVYGASKIAATSSTGKIEFLRKLGVDLPIDYTKENFEDLPDKFDVVYDLVGEADRAVKAIKEGGKIVSIVPPGFPPAIFFVLTSKGSILEKLRPYFESGQLKPIIDPKTPLPFSEVIEAFSYLETSRALGKVVIHPIP 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01096 328 SUPERFAMILY GroES-like 14 174 IPR011032 -
Trre11g01096 328 SMART PKS_ER_names_mod 29 324 IPR020843 GO:0016491
Trre11g01096 328 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 169 190 IPR002364 GO:0008270|GO:0016491
Trre11g01096 328 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 12 328 IPR044626 GO:0016628
Trre11g01096 328 CDD MDR_like_2 20 324 - -
Trre11g01096 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 141 263 IPR036291 -
Trre11g01096 328 Pfam Zinc-binding dehydrogenase 213 324 - -
Trre11g01096 328 Pfam Alcohol dehydrogenase GroES-like domain 48 108 IPR013154 -
Trre11g01096 328 Gene3D - 161 275 - -
Trre11g01096 328 Gene3D - 26 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01096 Trre-Chr11 10484664 10486968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01096 79 265 Monolignol Biosynthesis Gene Families AT4G37980 24.885 6.37e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01096 K18980 - gmx:100788619 529.25