Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01067 ATGAAGATAGGTGGAATGAAGGTTAAAGCTGATAGAGATGAATCAAATCCATATGCTGCTATGCTTGTTTCACAAGATGTTGCTACAGGATGCAAGGAGCTGGGCATAACTGCTCTTCATATCAAGCTCCGTGCAATTGGAGGAAACAAGAACAAAACACCAGGTCCTGGTGCTCAGGCTGCTCGCACGTTCAGGAATGAAAATCGGTCGCATAGGCGATCATAA 225 0.4489 MKIGGMKVKADRDESNPYAAMLVSQDVATGCKELGITALHIKLRAIGGNKNKTPGPGAQAARTFRNENRSHRRS 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01067 74 Gene3D Ribosomal protein S11 1 72 IPR036967 GO:0003735|GO:0005840|GO:0006412
Trre11g01067 74 Pfam Ribosomal protein S11 3 61 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trre11g01067 74 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 4 61 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trre11g01067 74 MobiDBLite consensus disorder prediction 47 74 - -
Trre11g01067 74 SUPERFAMILY Translational machinery components 4 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01067 Trre-Chr11 10046316 10047552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01067 4 61 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 82.759 2.68e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01067 K02955 - fve:101298237 105.145