Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g01067 | ATGAAGATAGGTGGAATGAAGGTTAAAGCTGATAGAGATGAATCAAATCCATATGCTGCTATGCTTGTTTCACAAGATGTTGCTACAGGATGCAAGGAGCTGGGCATAACTGCTCTTCATATCAAGCTCCGTGCAATTGGAGGAAACAAGAACAAAACACCAGGTCCTGGTGCTCAGGCTGCTCGCACGTTCAGGAATGAAAATCGGTCGCATAGGCGATCATAA | 225 | 0.4489 | MKIGGMKVKADRDESNPYAAMLVSQDVATGCKELGITALHIKLRAIGGNKNKTPGPGAQAARTFRNENRSHRRS | 74 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g01067 | 74 | Gene3D | Ribosomal protein S11 | 1 | 72 | IPR036967 | GO:0003735|GO:0005840|GO:0006412 | |
Trre11g01067 | 74 | Pfam | Ribosomal protein S11 | 3 | 61 | IPR001971 | GO:0003735|GO:0005840|GO:0006412 | |
Trre11g01067 | 74 | PANTHER | 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 | 4 | 61 | IPR001971 | GO:0003735|GO:0005840|GO:0006412 | |
Trre11g01067 | 74 | MobiDBLite | consensus disorder prediction | 47 | 74 | - | - | |
Trre11g01067 | 74 | SUPERFAMILY | Translational machinery components | 4 | 45 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g01067 | Trre-Chr11 | 10046316 | 10047552 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g01067 | 4 | 61 | Cytoplasmic Ribosomal Protein Gene Family | AT3G11510 | 82.759 | 2.68e-31 | 105 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g01067 | K02955 | - | fve:101298237 | 105.145 |