Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01066 ATGAGTGCAAGAAACTCAAGCACAGTTGGAAAACCATATGAAGGTGGAATGAAGGTTAAAGCTGATAGAGATGAATCAAATCCATATGCTGCTATGCTTGTTTCACAAGATGTTGCTACAGGATGCAAGGAGCTGGGCATAACTGCTCTTCATATCAAGCTCCGTGCAATTGGAGGAAACAAGAACAAAACACCAGGTCCTGGTGCTCAGGCTGCTCGCACGTTCAGGAATGAAAATCGGTCGCATAGGCGATCATAA 258 0.4457 MSARNSSTVGKPYEGGMKVKADRDESNPYAAMLVSQDVATGCKELGITALHIKLRAIGGNKNKTPGPGAQAARTFRNENRSHRRS 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01066 85 MobiDBLite consensus disorder prediction 1 21 - -
Trre11g01066 85 Gene3D Ribosomal protein S11 3 83 IPR036967 GO:0003735|GO:0005840|GO:0006412
Trre11g01066 85 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 14 72 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trre11g01066 85 Pfam Ribosomal protein S11 13 72 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trre11g01066 85 MobiDBLite consensus disorder prediction 58 85 - -
Trre11g01066 85 SUPERFAMILY Translational machinery components 13 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01066 Trre-Chr11 10046316 10047589 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01066 15 72 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 82.759 3.64e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01066 K02955 - fve:101298237 105.145