Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01060 ATGGTGATTCATGTGGACTCTATAAAGGACATGAGTGCAAGAAACTCAAGCACAGTTGGAAAACCATATGAAGGTGGAATGAAGGTTAAAGCTGATAGAGATGAATCAAATCCATATGCTGCTATGCTTGTTGCACAAGATGTTGCTACAGGATGCAAGGAGCTGGGCATAACTGCTCTTCATATCAAGCTCCGTGTAATTGGAGGAAACAAGAACAAAACACCAGGTCCTGGTGCTCAGGCTGCTCGCACGTTCAGGAATGAAAATCGGTCGCATAGGCGATCATAA 288 0.441 MVIHVDSIKDMSARNSSTVGKPYEGGMKVKADRDESNPYAAMLVAQDVATGCKELGITALHIKLRVIGGNKNKTPGPGAQAARTFRNENRSHRRS 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01060 95 Gene3D Ribosomal protein S11 3 94 IPR036967 GO:0003735|GO:0005840|GO:0006412
Trre11g01060 95 MobiDBLite consensus disorder prediction 70 95 - -
Trre11g01060 95 Pfam Ribosomal protein S11 17 82 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trre11g01060 95 SUPERFAMILY Translational machinery components 22 83 - -
Trre11g01060 95 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 18 82 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01060 Trre-Chr11 9893242 9894746 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01060 3 82 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 67.500 4.96e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01060 K02955 - fve:101298237 104.76