Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01037 ATGTCCTTGTTAACAGTGGCGCATCAAAGAGGTTCGGATCATCGGTTCACCGGATTCACAGCGAAAAGTGACATCGGTGATCGCGACGGTGGTAATGATTATGGAAATTCTAGTGCATCACAATCATTAAATTTCAACCAAATGCAGAGTAATTCTTCAATGGTTTATAGTGGTGATAGAGAATTAACACAAATGGTTTCAGCTCTTACACATGTTTCATCATCAGGGTCTAATCAAATGAGTAATAATAATGAATGGATTCAAAGAAGTGGTTTTCCTAATGAATCATCTTCATCTTCTTATTCTTCAAGTTCTGGTTCTGGTTTTGTTATGTCTTCTGGATCATGGAGTGGTAATAAAAGAGGGCGTGATGAAGAAAGTAGTGCTTCTAATAATCACTTTTTACCACAAGCTGTTCCTAAACTTTTTAGAACTGTTATGGTACCTTCTCACGGACAAGGACAAGGACAAGGAGAATCTTCATCGTCAGTGACTGAAGAAGCTCCAACCACAAGAGCAACCATAGCCACCGCCACATCAACAGCAGCGTCAATCGAAGACTCCGGCCAGCAGAGGAGAAGATACAGAGGAGTAAGGCAGAGACCATGGGGAAAATGGGCAGCAGAAATAAGAGATCCACACAAAGCACAAAGAGTATGGCTTGGAACATTTGATACAGCAGAATCCGCAGCAAGGGCTTATGATGAAGCTGCATTGAGATTCAGAGGAAGCAGAGCAAAACTCAACTTCCCAGAAAATGTTAGATCAATTATGCCTCCACCACCGCAACAACAACCACAACCACGACCGCAACCACAGTCATTATCACAACTTCAATCTTTTCCGGCAACTGTGGTTCCTTCTCGAACACCACAGCCGCCGGTTCAAGGTTCATCTGACTTGATTAGAGACTATTTGGAATATTCTCAAATTCTACAAAGTTCCGGTGATTTTCAACTACAACAAATGCAGCAGCAGCAACAACAACAAATGCAACAACAAGAACATGCTTCAAATTTGGTTCAACAATGGTATTATAATTCACAATTAGCTGCACTACAATCACATTCAATGTTATCATCATCATCATCACTTTATTTACCTTCTAATCTATCACCTCCAATAGCTACAATTTTACCTTCTACTCAATTTTCAACCTCTTCTAGTTCATTTCCCCTCTTTTCTAGTCAACAAATGGGATTTTTCCGGGCCCCAGAAAATCGTCCACCACCAGGTGGTGGACATGCTGGCGGAACAGAGTTTCCGCCTTCAACGTGGTCAGATACTAGTGGGCATCCACCACCACCTTATGGTTGA 1317 0.4169 MSLLTVAHQRGSDHRFTGFTAKSDIGDRDGGNDYGNSSASQSLNFNQMQSNSSMVYSGDRELTQMVSALTHVSSSGSNQMSNNNEWIQRSGFPNESSSSSYSSSSGSGFVMSSGSWSGNKRGRDEESSASNNHFLPQAVPKLFRTVMVPSHGQGQGQGESSSSVTEEAPTTRATIATATSTAASIEDSGQQRRRYRGVRQRPWGKWAAEIRDPHKAQRVWLGTFDTAESAARAYDEAALRFRGSRAKLNFPENVRSIMPPPPQQQPQPRPQPQSLSQLQSFPATVVPSRTPQPPVQGSSDLIRDYLEYSQILQSSGDFQLQQMQQQQQQQMQQQEHASNLVQQWYYNSQLAALQSHSMLSSSSSLYLPSNLSPPIATILPSTQFSTSSSSFPLFSSQQMGFFRAPENRPPPGGGHAGGTEFPPSTWSDTSGHPPPPYG 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01037 438 MobiDBLite consensus disorder prediction 401 438 - -
Trre11g01037 438 SMART rav1_2 194 257 IPR001471 GO:0003700|GO:0006355
Trre11g01037 438 FunFam Ethylene-responsive transcription factor 2 193 252 - -
Trre11g01037 438 Pfam AP2 domain 194 243 IPR001471 GO:0003700|GO:0006355
Trre11g01037 438 SUPERFAMILY DNA-binding domain 194 252 IPR016177 GO:0003677
Trre11g01037 438 MobiDBLite consensus disorder prediction 73 118 - -
Trre11g01037 438 PANTHER DNA-BINDING DOMAIN 165 340 IPR044808 GO:0003700|GO:0009873
Trre11g01037 438 Gene3D AP2/ERF domain 193 253 IPR036955 GO:0003700|GO:0006355
Trre11g01037 438 MobiDBLite consensus disorder prediction 149 198 - -
Trre11g01037 438 MobiDBLite consensus disorder prediction 252 278 - -
Trre11g01037 438 CDD AP2 202 253 IPR001471 GO:0003700|GO:0006355
Trre11g01037 438 MobiDBLite consensus disorder prediction 150 188 - -
Trre11g01037 438 MobiDBLite consensus disorder prediction 73 134 - -
Trre11g01037 438 ProSiteProfiles AP2/ERF domain profile. 194 251 IPR001471 GO:0003700|GO:0006355
Trre11g01037 438 PRINTS Ethylene responsive element binding protein signature 195 206 IPR001471 GO:0003700|GO:0006355
Trre11g01037 438 PRINTS Ethylene responsive element binding protein signature 217 233 IPR001471 GO:0003700|GO:0006355
Trre11g01037 438 MobiDBLite consensus disorder prediction 16 42 - -
Trre11g01037 438 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01037 Trre-Chr11 9506586 9509133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01037 146 254 AP2-EREBP Transcription Factor Family AT5G61890 58.261 7.78e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre11g01037 AP2 4.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01037 - - psat:127127635 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01037 11 9506586 9509133 Trre11g01037 11 9506586 9509133 ECH
Trre11g01037 11 9506586 9509133 Trre1g05230 1 58265470 58267248 PCT