Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g01007 | ATGTCGTTTCGCAGTATTGTTCGTGATGTAAGAGATGGAATTGGAAGTTTATCAATGAGGAGTTTTGAGGTAAGGCTTCCTGGCCATGATAGGAGCAAGTCGAGTAATATGGTCCATGAGTCGAACGAGCAGCCACATGTAATAGGGAATAGCCGGTGGGCTAGTCTTCCGTCCGAGCTTCTTTGCGATATAATTAAGAGATTGGAAGAAAGTGAGAGTACATGGCCTGCTCGAAAGCATTTTGTTGCTTGTGCTGCTGTCTGCAAATCTTGGAGAGAAATGTGCAAAGAAATTGCTTGCAGTGTTGAGTCTAGTGGGAAGATTACTTTCCCGGTTTCCCTAAAGCAGCCTGGCTATAAGGATGGACCTATTCAGTGTTTCATCAAGAGAGACAAATCTAATCAGACTTACCACCTTTACCTTTGTCTTAGTCCTGCATTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGAGTAGAAGAACAACTTGCACCGAGTACATTATATCAATGGATGCAGATAACATATCAAAGTCTAGCTGCACTTACATTGGAAAAATAAGGTCAAACTTTCTTGGCACCAAATTTATAGTTTATGACACACAGCCTCCATATAACAATGCTCAGCTGCTGCCTCCACCAGGCCGAAGCCGTAGATTTAATTCTACAAAGGTTTCTCCCAAAGTCCCTACTGGTAACTACAAGATTGCTGAGATCAACTATGAGTTGAATGTCCTCGGTACTAGGGGGCCGCGCAAGATGAACTGCATCATGTCCTCGATCCCTATGTCATCCCTCGAGCCCGGTGGAAATGTCCCCGGCCAGCCAGAGCTCCTTCCCTGCACCCTTGATGATTCCTTCCGGAGCATATCCTCAAAATCAATCTTTAACTCGTCCGAGTTTGGAAGTTCTAGATTCTTTGACAAAGTTGGGACTGGCAATGAAGAGGAAGGAAAAGACAGGCCTATAATTCTCAAGAACAAATCACCAAGATGGCATGAACAACTGCAGTGTTGGTGTCTTAACTTCAGAGGGCGGGTGACCGTTGCCTCGGTAAAGAATTTTCAATTGATTGCTTCAACGCAGCCAGCAGCAGGTGGTCCTACACCGTCTTCTCAGCCGACACAGTCTGATGATAAGGTTATTCTTCAATTTGGAAAAGTTGGAAAGGATATGTTCACTATGGATTACAGATATCCCTTATCTGCATTTCAGGCTTTTGCTATTTGCTTGACTAGTTTTGACACAAAACTAGCATGTGAATGA | 1272 | 0.4371 | MSFRSIVRDVRDGIGSLSMRSFEVRLPGHDRSKSSNMVHESNEQPHVIGNSRWASLPSELLCDIIKRLEESESTWPARKHFVACAAVCKSWREMCKEIACSVESSGKITFPVSLKQPGYKDGPIQCFIKRDKSNQTYHLYLCLSPALLVENGKFLLSAKRSRRTTCTEYIISMDADNISKSSCTYIGKIRSNFLGTKFIVYDTQPPYNNAQLLPPPGRSRRFNSTKVSPKVPTGNYKIAEINYELNVLGTRGPRKMNCIMSSIPMSSLEPGGNVPGQPELLPCTLDDSFRSISSKSIFNSSEFGSSRFFDKVGTGNEEEGKDRPIILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPAAGGPTPSSQPTQSDDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE | 423 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g01007 | 423 | Pfam | Tub family | 114 | 418 | IPR000007 | - | |
Trre11g01007 | 423 | PRINTS | Tubby superfamily signature | 327 | 344 | IPR000007 | - | |
Trre11g01007 | 423 | PRINTS | Tubby superfamily signature | 380 | 399 | IPR000007 | - | |
Trre11g01007 | 423 | PRINTS | Tubby superfamily signature | 401 | 423 | IPR000007 | - | |
Trre11g01007 | 423 | PRINTS | Tubby superfamily signature | 235 | 262 | IPR000007 | - | |
Trre11g01007 | 423 | PRINTS | Tubby superfamily signature | 345 | 361 | IPR000007 | - | |
Trre11g01007 | 423 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Trre11g01007 | 423 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Trre11g01007 | 423 | SUPERFAMILY | Tubby C-terminal domain-like | 103 | 423 | IPR025659 | - | |
Trre11g01007 | 423 | Gene3D | Tubby Protein; Chain A | 110 | 423 | IPR025659 | - | |
Trre11g01007 | 423 | Gene3D | - | 49 | 100 | - | - | |
Trre11g01007 | 423 | CDD | F-box_AtTLP-like | 53 | 97 | - | - | |
Trre11g01007 | 423 | PANTHER | TUBBY-RELATED | 38 | 421 | - | - | |
Trre11g01007 | 423 | SUPERFAMILY | F-box domain | 41 | 96 | IPR036047 | GO:0005515 | |
Trre11g01007 | 423 | ProSitePatterns | Tub family signature 1. | 345 | 358 | IPR018066 | - | |
Trre11g01007 | 423 | ProSitePatterns | Tub family signature 2. | 408 | 423 | IPR018066 | - | |
Trre11g01007 | 423 | FunFam | Tubby-like F-box protein | 110 | 423 | - | - | |
Trre11g01007 | 423 | Pfam | F-box domain | 53 | 98 | IPR001810 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g01007 | Trre-Chr11 | 9181456 | 9186194 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g01007 | 1 | 423 | TUB Transcription Factor Family | AT1G76900 | 65.275 | 0.0 | 560 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Trre11g01007 | Tub | 3.1e-113 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g01007 | K19600 | - | qsu:111992792 | 682.559 |