Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01007 ATGTCGTTTCGCAGTATTGTTCGTGATGTAAGAGATGGAATTGGAAGTTTATCAATGAGGAGTTTTGAGGTAAGGCTTCCTGGCCATGATAGGAGCAAGTCGAGTAATATGGTCCATGAGTCGAACGAGCAGCCACATGTAATAGGGAATAGCCGGTGGGCTAGTCTTCCGTCCGAGCTTCTTTGCGATATAATTAAGAGATTGGAAGAAAGTGAGAGTACATGGCCTGCTCGAAAGCATTTTGTTGCTTGTGCTGCTGTCTGCAAATCTTGGAGAGAAATGTGCAAAGAAATTGCTTGCAGTGTTGAGTCTAGTGGGAAGATTACTTTCCCGGTTTCCCTAAAGCAGCCTGGCTATAAGGATGGACCTATTCAGTGTTTCATCAAGAGAGACAAATCTAATCAGACTTACCACCTTTACCTTTGTCTTAGTCCTGCATTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGAGTAGAAGAACAACTTGCACCGAGTACATTATATCAATGGATGCAGATAACATATCAAAGTCTAGCTGCACTTACATTGGAAAAATAAGGTCAAACTTTCTTGGCACCAAATTTATAGTTTATGACACACAGCCTCCATATAACAATGCTCAGCTGCTGCCTCCACCAGGCCGAAGCCGTAGATTTAATTCTACAAAGGTTTCTCCCAAAGTCCCTACTGGTAACTACAAGATTGCTGAGATCAACTATGAGTTGAATGTCCTCGGTACTAGGGGGCCGCGCAAGATGAACTGCATCATGTCCTCGATCCCTATGTCATCCCTCGAGCCCGGTGGAAATGTCCCCGGCCAGCCAGAGCTCCTTCCCTGCACCCTTGATGATTCCTTCCGGAGCATATCCTCAAAATCAATCTTTAACTCGTCCGAGTTTGGAAGTTCTAGATTCTTTGACAAAGTTGGGACTGGCAATGAAGAGGAAGGAAAAGACAGGCCTATAATTCTCAAGAACAAATCACCAAGATGGCATGAACAACTGCAGTGTTGGTGTCTTAACTTCAGAGGGCGGGTGACCGTTGCCTCGGTAAAGAATTTTCAATTGATTGCTTCAACGCAGCCAGCAGCAGGTGGTCCTACACCGTCTTCTCAGCCGACACAGTCTGATGATAAGGTTATTCTTCAATTTGGAAAAGTTGGAAAGGATATGTTCACTATGGATTACAGATATCCCTTATCTGCATTTCAGGCTTTTGCTATTTGCTTGACTAGTTTTGACACAAAACTAGCATGTGAATGA 1272 0.4371 MSFRSIVRDVRDGIGSLSMRSFEVRLPGHDRSKSSNMVHESNEQPHVIGNSRWASLPSELLCDIIKRLEESESTWPARKHFVACAAVCKSWREMCKEIACSVESSGKITFPVSLKQPGYKDGPIQCFIKRDKSNQTYHLYLCLSPALLVENGKFLLSAKRSRRTTCTEYIISMDADNISKSSCTYIGKIRSNFLGTKFIVYDTQPPYNNAQLLPPPGRSRRFNSTKVSPKVPTGNYKIAEINYELNVLGTRGPRKMNCIMSSIPMSSLEPGGNVPGQPELLPCTLDDSFRSISSKSIFNSSEFGSSRFFDKVGTGNEEEGKDRPIILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPAAGGPTPSSQPTQSDDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01007 423 Pfam Tub family 114 418 IPR000007 -
Trre11g01007 423 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Trre11g01007 423 PRINTS Tubby superfamily signature 380 399 IPR000007 -
Trre11g01007 423 PRINTS Tubby superfamily signature 401 423 IPR000007 -
Trre11g01007 423 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Trre11g01007 423 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Trre11g01007 423 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Trre11g01007 423 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Trre11g01007 423 SUPERFAMILY Tubby C-terminal domain-like 103 423 IPR025659 -
Trre11g01007 423 Gene3D Tubby Protein; Chain A 110 423 IPR025659 -
Trre11g01007 423 Gene3D - 49 100 - -
Trre11g01007 423 CDD F-box_AtTLP-like 53 97 - -
Trre11g01007 423 PANTHER TUBBY-RELATED 38 421 - -
Trre11g01007 423 SUPERFAMILY F-box domain 41 96 IPR036047 GO:0005515
Trre11g01007 423 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Trre11g01007 423 ProSitePatterns Tub family signature 2. 408 423 IPR018066 -
Trre11g01007 423 FunFam Tubby-like F-box protein 110 423 - -
Trre11g01007 423 Pfam F-box domain 53 98 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01007 Trre-Chr11 9181456 9186194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01007 1 423 TUB Transcription Factor Family AT1G76900 65.275 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre11g01007 Tub 3.1e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01007 K19600 - qsu:111992792 682.559