Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01006 ATGAAGAGTAGTTTTCTTAGGTGTATGGCATCCTTGGAAAAACATAAACCTTATGTTGCAATGCTCTTTATTCAATTTATATATGCAGGAATGGCTCTTCTTTCAAAGGCAGCAATTTCCAAAGGAATGAGTCCTTATGTGTTTGTTGTTTATCGCCAAATCTTTGCTTCACTTGCCTTATCTCCATTTGCTTATTTTGACAGTAAGCATGGTGCTCCTTTGTCATGCAACTTGTTGTGCAAATTGTTTCTAGTTTCTCTTGTTGGGTTAACAGCAAGTTCAAACCTTTACTATGTTGCTATCAACTATACCTCTGCAACATTTGCTGCTGCAAGCACAAACACTATCCCTTCCATTACTTTTATCATGGCTGTTTTAATTGGGGTTGAAAGCATTTCAATAAAATATATGCATGGAGTGGCAAAAATTTTGGGCTCTGTTTTATGTATTTCAGGGGCTATAGTATTTGCTTTAGTGAAAGGTCCTCCATTAGATTTCATAGGGTGGCATCATGAAAATCAGAATCATAATTCTCATGATCAATTCACAAAGGTTCATTCCAAAGGGGATAACATTAAAGGCTCTCTTATGATGCTCTTAGCAAACACTGGTTGGTCCTTATGGCTTATTTTGCAGGGATTTATTGTAAGGCAATACCCAGCAAAATTTCGGCTCACAATTATACAATGCTTTTTTAGCTTCATACAATCAGGTATTTTGGCCATTGCAATGGAGAGGAATCCTTCTGCATGGAAGCTAGGATGGGATTTTCATCTTCTTTCTGTGGCTTATTGTGGTATAATTGTAACTGGCATTTGTTATTGGCTTCAAGTATGCACAATAGAGATTAAAGGTCCAGTTTTCACTGCCATGTTCACCCCTCTAGCTCTTGTACTCACAGCCATTTTCTCAGCAATTTGGTGGAAAGAAACACTCTTCTGGGGAAGTATTGGTGGCACTATTTTGCTAGTGATTGGACTCTATAGTGTTTTGTGGGGGAAGAATAAGGAAGGTGTAAAAGAGGAAAACCATGAAGATGAAGAAGCAAAAGTAGAGACCAAATTGGAGTGCGTTATATAG 1080 0.3778 MKSSFLRCMASLEKHKPYVAMLFIQFIYAGMALLSKAAISKGMSPYVFVVYRQIFASLALSPFAYFDSKHGAPLSCNLLCKLFLVSLVGLTASSNLYYVAINYTSATFAAASTNTIPSITFIMAVLIGVESISIKYMHGVAKILGSVLCISGAIVFALVKGPPLDFIGWHHENQNHNSHDQFTKVHSKGDNIKGSLMMLLANTGWSLWLILQGFIVRQYPAKFRLTIIQCFFSFIQSGILAIAMERNPSAWKLGWDFHLLSVAYCGIIVTGICYWLQVCTIEIKGPVFTAMFTPLALVLTAIFSAIWWKETLFWGSIGGTILLVIGLYSVLWGKNKEGVKEENHEDEEAKVETKLECVI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01006 359 PANTHER WAT1-RELATED PROTEIN 16 341 IPR030184 GO:0016020|GO:0022857
Trre11g01006 359 Pfam EamA-like transporter family 16 151 IPR000620 GO:0016020
Trre11g01006 359 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
Trre11g01006 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 336 - -
Trre11g01006 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01006 Trre-Chr11 9168885 9175128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01006 8 357 Nodulin-like Gene Family AT5G07050 36.212 5.75e-81 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01006 - - lja:Lj0g3v0009669.1 572.007