Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01000 ATGCTAGGGGACTCAGCAGTGTTAGGAACAGGAGGAGGTAGCTCAGGAGATGGAGGAGCTTACCATGACGGCGGAGAGACGGCTATAGGTGGTGGTGGATCAATTTCAGGAGATGATGAAAGAGGGGGTGGTAGTAGAAATGAAGAGGGTGTGGATAGAAGTTTTGGTGGTAATAGATGGCCAAGACAAGAAACTCTTGCTTTGTTGAAGATAAGGTCAGATATGGATGTTGCTTTTAGAGATGCAAGTGTCAAAGGTCCCTTATGGGATGAAGTTTCAAGGAAAATGGCAGATCTTGGGTATCAAAGAAACTCCAAAAAATGCAAAGAGAAATTTGAAAATGTTTATAAATATCACAAGAGAACCAAAGAAGGAAGAGGTGGTAAATCAGATGGTAAAACTTATAGATTTTTTGATCAATTACAAGCCCTTGAAAATAACCCTTCAATTCAATCACCAAAACCACAACAATTGAACACAACACCATCACAATCATCTACACCTACAACAACAGCTCCATTGCTATTACCACCCCCATTATTAAACTCCACACTTCCTATTGCTATTCCCACCCCTCCCACCACTACTGTTCCATCAGCAACTACACTTCCAATTCCAATGTCTTACACACAATCCAACCCTACAAATTTTCCACCAATGCCAACACCCCCACAAACAACAAACCCTACAAATCCAAATAACCCTCTTCCTCAAATTACCATTACACCCCCGCCGTCTTCATTCCCCAACATTTCAGCAGATTTCTTCTCTAATTCAAGTTCATCTTCAACTTCTTCGGAGGAAACGACGACGATGGAAGGTGGATCGAACCGGCGGAAGAGGAAGAGAAAGTGGAAGGATTTCTATGAGAGAATAATGAAGGAAGTTCTTCAGAAACAAGAGGAGTTGCATAAGAGATTCTTGGAAGCTATTGAGAAAAGAGAAAGAGAGAGATGTGCTAGAGAAGAAGCTTGGAGGTTACAAGAGATGCAAAGGATTAATAGAGAAAGGGAAATTCTTGCTCAAGAGAGATCTATTGCTGCTGCTAAAGATGCTGCTGTTATGGCTTTTTTGCAAAAGATTGCTGAACAACAAGAACAACAACAAAATGTTGTTCCTCCTCCATTGAATAACAATGTCATTGTTCCTCAACAACACCAACAATTGCCGCAAGAAACTACACCGGCACCAACACCAATAGCAAAGCCTTTACCAACACCAACACCAGTATCATTGCCAATGCCGACACCACAAGTTCAAACTCCGGTGCCATTGCCAGTTCCAATACCGGCACCAGTTATACCTCAGGTTTCACCGTTGGCGCAACAACAGGTTCAAGTTCAGCAGCAAGTGACGAATATGGAAATTGTGAAAAGTGACAACAACGGTACCGAGAGTGCGATGCAAGCAAGTTCTTCAAGGTGGCCGAAAACCGAGGTTGAGGCATTGATAAAGCTGAGAACAACTCTTGATTTGAAGTACCAAGAAAATGGACCCAAAGGGCCACTATGGGAAGAGATTTCAAGCTTGATGAAGAACTTGGGGTACAATAGGAATGCAAAGAGGTGCAAAGAGAAATGGGAGAATATTAACAAGTATTTCAAGAAAGTGAAAGAAAGCAACAAGAAGAGGCCAGAAGATTCAAAAACATGTCCTTATTTTCACCAGTTGGATGCTCTATATAGGGAGAAGAACAAGGGAGAGGGTGCTGCGGTAGCGAGGCCTGAGGGAACGATGATGGCGCCATTGATGGTTCAGCCGGAGCAGCAGTGGCCTCCACAGCAGCCACCACCAGCAACTGGGGCAGATGTGACAATGGAGGATGCCGAGAAAGACAAGCCGCACCGTGATGAAGAAGGGTATTATGATGAAGACGACGGTGACGATGAAGAAGAGGAAGATGAAGGCAGTGACAACTATGAAGTGGTTGCTAACAAACCACCCCCACCTCAATAA 1956 0.4361 MLGDSAVLGTGGGSSGDGGAYHDGGETAIGGGGSISGDDERGGGSRNEEGVDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKMADLGYQRNSKKCKEKFENVYKYHKRTKEGRGGKSDGKTYRFFDQLQALENNPSIQSPKPQQLNTTPSQSSTPTTTAPLLLPPPLLNSTLPIAIPTPPTTTVPSATTLPIPMSYTQSNPTNFPPMPTPPQTTNPTNPNNPLPQITITPPPSSFPNISADFFSNSSSSSTSSEETTTMEGGSNRRKRKRKWKDFYERIMKEVLQKQEELHKRFLEAIEKRERERCAREEAWRLQEMQRINREREILAQERSIAAAKDAAVMAFLQKIAEQQEQQQNVVPPPLNNNVIVPQQHQQLPQETTPAPTPIAKPLPTPTPVSLPMPTPQVQTPVPLPVPIPAPVIPQVSPLAQQQVQVQQQVTNMEIVKSDNNGTESAMQASSSRWPKTEVEALIKLRTTLDLKYQENGPKGPLWEEISSLMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKGEGAAVARPEGTMMAPLMVQPEQQWPPQQPPPATGADVTMEDAEKDKPHRDEEGYYDEDDGDDEEEEDEGSDNYEVVANKPPPPQ 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01000 651 MobiDBLite consensus disorder prediction 585 651 - -
Trre11g01000 651 MobiDBLite consensus disorder prediction 191 282 - -
Trre11g01000 651 MobiDBLite consensus disorder prediction 621 638 - -
Trre11g01000 651 MobiDBLite consensus disorder prediction 41 55 - -
Trre11g01000 651 MobiDBLite consensus disorder prediction 1 59 - -
Trre11g01000 651 MobiDBLite consensus disorder prediction 147 171 - -
Trre11g01000 651 MobiDBLite consensus disorder prediction 200 215 - -
Trre11g01000 651 FunFam Trihelix transcription factor GT-2 475 536 - -
Trre11g01000 651 MobiDBLite consensus disorder prediction 605 620 - -
Trre11g01000 651 ProSiteProfiles Myb-like domain profile. 467 531 IPR001005 -
Trre11g01000 651 FunFam Trihelix transcription factor GT-2 60 121 - -
Trre11g01000 651 MobiDBLite consensus disorder prediction 147 179 - -
Trre11g01000 651 MobiDBLite consensus disorder prediction 216 244 - -
Trre11g01000 651 CDD GT1 58 123 - -
Trre11g01000 651 PANTHER FI21293P1 38 608 - -
Trre11g01000 651 MobiDBLite consensus disorder prediction 245 272 - -
Trre11g01000 651 ProSiteProfiles Myb-like domain profile. 58 116 IPR001005 -
Trre11g01000 651 SMART sant 471 533 IPR001005 -
Trre11g01000 651 SMART sant 56 118 IPR001005 -
Trre11g01000 651 Coils Coil 297 317 - -
Trre11g01000 651 Gene3D - 475 536 - -
Trre11g01000 651 Gene3D - 60 121 - -
Trre11g01000 651 CDD GT1 473 538 - -
Trre11g01000 651 Pfam Myb/SANT-like DNA-binding domain 473 560 IPR044822 -
Trre11g01000 651 Pfam Myb/SANT-like DNA-binding domain 58 144 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01000 Trre-Chr11 9124039 9127187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01000 451 591 Trihelix Transcription Factor Family AT1G76880 66.883 2.87e-61 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre11g01000 Myb_DNA-bind_4 9.9e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01000 - - psat:127127275 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01000 11 9124039 9127187 Trre11g01000 11 9124039 9127187 ECH
Trre11g01000 11 9124039 9127187 Trre1g05249 1 58494124 58497021 PCT