Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00999 ATGGAAGCGAATTTAGCTCAGGGAGGTATAATTCAAGGTGGTGGTGGTTCTTTTGGTGGATTTGATTTGCCGGGATCAATGCGAGTTAATCGTCAAGCGCAACATACAATGAACCAACATCAAGCTCATCCGTGTCAAGGGTCATCGGTGCATTCGTCAATTCATGACGGTTTTCCTCTTACAATGGGGACATTGCAGAACTCTGATCAGACAATGTCGATGAATGAGTTTGGTCAGGGAGATAGAAACAAACACTCGGGGAGTGAGGAAGACGAGCCTGAGGAAGGTGGTGATGGTCATCATCAAGAAGGTGGTAGAGGGAAAAAGGAGACGCCTTGGCAGCGTGTGAAATGGACTGATAAGATGGTGAGGCTTTTGATAACGGCGGTGTCTTATATTGGTGAGGACGGAAGTTCTGAAGGTGGGGGTGGTGGAAGGAGGAAATTTGCGGTGTTGCAGAAAAAGGGTAAGTGGAAATCTATTTCTAAGGTTATGGCTGAAAGAGGTTATCGTGTTTCGCCTCAGCAATGTGAGGATAAATTCAATGATCTTAATAAAAGGTACAAAAAGCTTAACGATATGCTTGGAAGGGGAACTTCTTGTCAGGTTGTTGAAAATCCGGCTCTGTTGGATGTAATAGATTTTCTTAACGAGAAAGAAAAGGATGATGTTAGAAAAATTTTAAACTCGAAACATCTCTTCTATGAAGAGATGTGTTCTTACCATAATTGTAATAGGTTGCATTTGCCGCACGATCCTGCATTGCAACGTTCCCTGCAAATAGCTCTCCGAAATAGAGATGACCATGATAACGATGATGTGAGAAGGTCCTATCATGATGATCATGATGAAGATGACCATGATATGGAAACTGATGATCATGATGAGTTCGAAGAGAATTTTACTTCCCATGGTGATAATCGAGGAATCTTTGGAGGATTGGGAGGAACTACGAAAAGACCAAGACAAGGCCAAGGACACGAAGATCCTACTACTTTCGGGAATTCTTTAAATTGTCAGGAGTACCATAAAACTTCGCATCCTCATGGACAAACGGTCCAAACAGACGGAAATCAAGCTTTACCTGAAAACATGAGAGCAGCTTGGTTACAGAAGCAATGGTTGGATTCTCGTTCAGTTCAGTTAGAAGAACAGAAGCTACAAATTCAGGTTGAGATGCTGGAATTAGAGAAACAAAGATTCAAGTGGGAGAGGTTTAGCAAGAAACAAGACCGGGAGTTGGAGAAATTCAAGCTGGAGAACGATAGAATGAAGATTGAGAATGAACGTATTGCTTTAGAACTAAAGCGAAAGGAGATCGGCGGAACCAGCTTTAACTAG 1341 0.4236 MEANLAQGGIIQGGGGSFGGFDLPGSMRVNRQAQHTMNQHQAHPCQGSSVHSSIHDGFPLTMGTLQNSDQTMSMNEFGQGDRNKHSGSEEDEPEEGGDGHHQEGGRGKKETPWQRVKWTDKMVRLLITAVSYIGEDGSSEGGGGGRRKFAVLQKKGKWKSISKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDVIDFLNEKEKDDVRKILNSKHLFYEEMCSYHNCNRLHLPHDPALQRSLQIALRNRDDHDNDDVRRSYHDDHDEDDHDMETDDHDEFEENFTSHGDNRGIFGGLGGTTKRPRQGQGHEDPTTFGNSLNCQEYHKTSHPHGQTVQTDGNQALPENMRAAWLQKQWLDSRSVQLEEQKLQIQVEMLELEKQRFKWERFSKKQDRELEKFKLENDRMKIENERIALELKRKEIGGTSFN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00999 446 PANTHER F16F4.11 PROTEIN-RELATED 1 440 - -
Trre11g00999 446 Pfam Myb/SANT-like DNA-binding domain 115 241 IPR044822 -
Trre11g00999 446 Coils Coil 379 404 - -
Trre11g00999 446 MobiDBLite consensus disorder prediction 33 81 - -
Trre11g00999 446 MobiDBLite consensus disorder prediction 82 114 - -
Trre11g00999 446 MobiDBLite consensus disorder prediction 269 284 - -
Trre11g00999 446 MobiDBLite consensus disorder prediction 269 295 - -
Trre11g00999 446 Coils Coil 407 436 - -
Trre11g00999 446 MobiDBLite consensus disorder prediction 33 114 - -
Trre11g00999 446 Gene3D - 118 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00999 Trre-Chr11 9101149 9102489 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre11g00999 Myb_DNA-bind_4 1.1e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00999 - - gmx:100812134 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00999 11 9101149 9102489 Trre11g00999 11 9101149 9102489 ECH
Trre11g00999 11 9101149 9102489 Trre1g05250 1 58528775 58530145 PCT