Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00978 ATGGCAGATCTTGTTAACTACGGGAATGCTGATCGTAACATTGAGCAAGCATTGATTGCTTTGAAAAAGGGTGCTCAACTACTTAAATATGGTAGAAAGGGAAAGCCAAAATTTTGTCCATTTAGACTCTCACATGATGGATCATCTTTAATCTGGATTTCAAGTGGTGGCGAAAAAAGTCTGAAGCTATCTTCTGTCTCAAGAATCATTCCTGGACAAAGAACTGCTGTTTTCCAACGGTACCTGCGTCCTGAGAAGGACTATGTGTCTTTTTCACTTATTTACAATAACGGAAAGCGGTCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCTGATGTGTGGATTTCTGGTCTCAAAAAACTGATATCCTCAGGGCAAGGTGGTCGGTCCAAAATTGACGGATGGAGTGACGGTGGCCTCAATCTTGATGATAGCAAAGACTTAACATCCAACAGTCCAAGTGAAAGTTCAGCTAGTGCGTCACTAGACATCAGTTCTCCCGACATTTCTGTGAGTCTTCCAAACACTTCACCAAAGTCCTTTCGGCCTGACAATACCTTAAATTCTGAAAGGTCACATGCACCATCAGAGTCAACAAATATGCAAATAAAAGGATCCGGCACAGATAATTTTCGTGTTAGTGTTTCAAGTGCCCCCAGCACGTCTAGTCATGGATCTGCACAAGATGATTACGATGCTCTGGCCGATGTATACATTTGGGGGGAAATTATCTGCGAAAACATCAAAGTTGGTGCTGACAAAAGTGTCCATTATTTCAGCCCAAGGGCTGATGTGCTTCTCCCGAGACCATTGGAGTCCAATGTAGTTTTAGATGTACAGCATATAGCATGTGGTGTTAAACATGCTTCGTTAGTCACTAGGCAAGGTGAAGTTTTTACGTGGGGTGAAGAATCGGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTCGTTGAAGCATTGAATTCTACAACTGTTGATTTTGTTGCATGCGGGGAGTTCCATTCCTGCGCTGTTACAATGACCGGGGAACTATATACGTGGGGTGATGGTACTCATAATGCTGGATTGCTAGGTCATGGGTCTAATTTTAGTCATTGGATACCGAAGAGAATTGGGGGTCCATTAGAGGGACTTCAAGTTTCATTTGTTGCTTGTGGCCCATGGCAGACAGCCTTGATTACTTCAACCGGGAAGCTCTTTACATTTGGCGATGGAACTTTTGGTGTCTTGGGACACGGAGATAGGGAAAATGTTTCGTATCCTAGAGAAGTTGAATCATTATTAGGGTTGAGGACGATAGCTGTTGCATGTGGAGTGTGGCACACTGCAGCTGTTGTAGAGGTTATTGCAACACAATCTATTGCTAGTTTATCGTCAGGTAAATTGTTTACTTGGGGAGACGGAGATAAAAATCGCCTCGGGCACGGTGACAAAGAGGCACGGCTTAAACCAACTTGTGTGCCTGCTATTATTGATTACAATTTTCAAAAAATTGCTTGTGGGCATAGTTTGACAGTAGGGCTGACAACATCCGGACAAGTTTTTACCATGGGAAGTACCGTTTACGGTCAGCTTGGGAATCCTCAGTCCGATGGAAAGCTTCCATGCTTGGTCGGAGATAAGATTGCCTTGGAATCCATTGAAGAAATTGCTTGTGGTGCATATCATGTGGCTGTTTTAACATCCAAAAATGAAGTTTATACTTGGGGTAAAGGTTCAAATGGGAGATTAGGTCATGGTGATGTTGAAGATAGAAAAACGCCGACTTTGGTTGAAGCATTAAAAGATAGACATGTGAAATATATTGCATGTGGTTCAAATTACTCTGCCGCCATATGCCTTCATAAGTGGGTATCCAGTGCTGAACAGTCTCAGTGCTCGGCTTGTAGACAAGCATTTGGCTTCACTCGAAAGCGGCACAATTGTTATCATTGTGGACTTGTGCACTGCCATTCATGCAGTTCAAGGAAAGTATTAAGAGCAGCACTGGCTCCTAACCCTGACAAGCCGTACCGTGTGTGCGACTCTTGTTATGCGAAATTGAGCAAGGTTACAGAAGCTAGCAATCATAATCGGAGGAACTCTTTACCGCGTCTTTCGGGTGAAAACAAGGACAGGTTAGACAAGGGTGATCTAAGATTGTCCAAGGCTGTTGTTCCTTCAAATATGGATTTGATAAAGCAACTAGATAATAAAGCAGCAAAACAAGGAAAGAAAGCTGATACATTCTCGCTAGCTCGCAACTCACAAACGTCTTTGCTACAGCTAAAAGATGTTGTCTTCTCCACTGCTGTTGATCTGAGACGAACAGCTCCAAGACCGGTGATTGCACCGTCGGGAGTAAGTTCAAGGTCTGGGTCCCCTTTCTCCAGAAGATCAAGTCCTCCTCGTTCAGCTACGCCTATTCCAACAATGTCGGGACTCTCCTTCTCCAAAAATATTGCTGATAGTTTGAAGAAAACAAATGAGCTTTTAAATCAAGAAGTTCAGAAGTTACGTTCTCAGGTTGAGAGCCTGAAACAAAAATGTGAACGGCAAGAATTAGAGGTTCAGAGGTCAGTAAAAAAGACTCAAGAAGCTATGGCACTAGCTACCGAGGAGTCTACTAAATGCAAAGCTGCAAAAGAAGTTATAAAATCGCTTACCTCACAGCTCAAAGATCTAGCCGAGAAGCTTCCTCCTGAAGTCTATGATGCTGAGAAAATTAGAACAGCTTATCTACCAAATGGTCTCGAGTCGAATGGCATGCACTATCCGGATTCAAATGGGGACCAGCACTCCACGGTGGAATCAATCAGCGCTTCAAGTTTGGCCTCCATAGGACCTGAACCCTCTCTGTACAAAAGAACAGTCGGTAGTTTGCCAGGATCCTATGGATCTAATCTCCCCCAGCAACTCCGGGGTGTTGTGACTGCCAATGGGACCAGTAATTATCCAAATGTTAAATTACCAAATGGCGATGGCGTGCTTCGCTCAAGCAGTAGTAGTTTGTCAGATATTAATGATGGTAGGGATTCTGGGAATTTCCGTGATGACGAGAGTGGTTTGAAATCGACAAATGCTGCAACGGCTACTAATAGTAATAATCAAGTTGACGCAGAATGGATTGAACAGTATGAACCTGGTGTTTATATAACGCTTGTGGCCATGCATGATGGAACAAGAGATCTGAAACGAGTGCGCTTCAGCCGGAGGAGATTTGGAGAGAACCAAGCTGAGAATTGGTGGTCAGAGAACCGAGAGAAGGTGTACGAAAAATACAATGTTCATAACGTGGATAAGTCTTCTAGCCAAGCAGCACATAAGTCAGAGGCTGTCGGTTCTCCTGCTTCCCAAACTTAG 3363 0.4377 MADLVNYGNADRNIEQALIALKKGAQLLKYGRKGKPKFCPFRLSHDGSSLIWISSGGEKSLKLSSVSRIIPGQRTAVFQRYLRPEKDYVSFSLIYNNGKRSLDLICKDKVEADVWISGLKKLISSGQGGRSKIDGWSDGGLNLDDSKDLTSNSPSESSASASLDISSPDISVSLPNTSPKSFRPDNTLNSERSHAPSESTNMQIKGSGTDNFRVSVSSAPSTSSHGSAQDDYDALADVYIWGEIICENIKVGADKSVHYFSPRADVLLPRPLESNVVLDVQHIACGVKHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALNSTTVDFVACGEFHSCAVTMTGELYTWGDGTHNAGLLGHGSNFSHWIPKRIGGPLEGLQVSFVACGPWQTALITSTGKLFTFGDGTFGVLGHGDRENVSYPREVESLLGLRTIAVACGVWHTAAVVEVIATQSIASLSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPAIIDYNFQKIACGHSLTVGLTTSGQVFTMGSTVYGQLGNPQSDGKLPCLVGDKIALESIEEIACGAYHVAVLTSKNEVYTWGKGSNGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSSAEQSQCSACRQAFGFTRKRHNCYHCGLVHCHSCSSRKVLRAALAPNPDKPYRVCDSCYAKLSKVTEASNHNRRNSLPRLSGENKDRLDKGDLRLSKAVVPSNMDLIKQLDNKAAKQGKKADTFSLARNSQTSLLQLKDVVFSTAVDLRRTAPRPVIAPSGVSSRSGSPFSRRSSPPRSATPIPTMSGLSFSKNIADSLKKTNELLNQEVQKLRSQVESLKQKCERQELEVQRSVKKTQEAMALATEESTKCKAAKEVIKSLTSQLKDLAEKLPPEVYDAEKIRTAYLPNGLESNGMHYPDSNGDQHSTVESISASSLASIGPEPSLYKRTVGSLPGSYGSNLPQQLRGVVTANGTSNYPNVKLPNGDGVLRSSSSSLSDINDGRDSGNFRDDESGLKSTNAATATNSNNQVDAEWIEQYEPGVYITLVAMHDGTRDLKRVRFSRRRFGENQAENWWSENREKVYEKYNVHNVDKSSSQAAHKSEAVGSPASQT 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00978 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 571 622 IPR000408 -
Trre11g00978 1120 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 627 689 IPR017455 -
Trre11g00978 1120 SMART fyve_4 622 690 IPR000306 GO:0046872
Trre11g00978 1120 Pfam FYVE zinc finger 623 689 IPR000306 GO:0046872
Trre11g00978 1120 MobiDBLite consensus disorder prediction 922 946 - -
Trre11g00978 1120 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 893 - -
Trre11g00978 1120 MobiDBLite consensus disorder prediction 787 814 - -
Trre11g00978 1120 SUPERFAMILY RCC1/BLIP-II 237 624 IPR009091 -
Trre11g00978 1120 Coils Coil 822 863 - -
Trre11g00978 1120 ProSiteProfiles BRX domain profile. 1040 1095 IPR013591 -
Trre11g00978 1120 Gene3D - 13 129 IPR011993 -
Trre11g00978 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 467 518 IPR000408 -
Trre11g00978 1120 MobiDBLite consensus disorder prediction 781 814 - -
Trre11g00978 1120 MobiDBLite consensus disorder prediction 978 1010 - -
Trre11g00978 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 348 IPR000408 -
Trre11g00978 1120 PRINTS Chromosome condensation regulator RCC1 signature 557 573 IPR000408 -
Trre11g00978 1120 PRINTS Chromosome condensation regulator RCC1 signature 439 452 IPR000408 -
Trre11g00978 1120 PRINTS Chromosome condensation regulator RCC1 signature 573 587 IPR000408 -
Trre11g00978 1120 PRINTS Chromosome condensation regulator RCC1 signature 405 421 IPR000408 -
Trre11g00978 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 519 570 IPR000408 -
Trre11g00978 1120 Pfam Transcription factor regulating root and shoot growth via Pin3 1040 1094 IPR013591 -
Trre11g00978 1120 MobiDBLite consensus disorder prediction 921 946 - -
Trre11g00978 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 403 IPR000408 -
Trre11g00978 1120 Coils Coil 878 898 - -
Trre11g00978 1120 Pfam Transcription factor BRX N-terminal domain 873 908 IPR027988 -
Trre11g00978 1120 MobiDBLite consensus disorder prediction 704 720 - -
Trre11g00978 1120 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Trre11g00978 1120 FunFam PH, RCC1 and FYVE domains-containing protein 1 457 628 - -
Trre11g00978 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 404 455 IPR000408 -
Trre11g00978 1120 SUPERFAMILY FYVE/PHD zinc finger 623 697 IPR011011 -
Trre11g00978 1120 CDD PH_PLC_plant-like 12 124 - -
Trre11g00978 1120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 700 IPR013083 -
Trre11g00978 1120 Gene3D - 186 454 IPR009091 -
Trre11g00978 1120 Gene3D - 455 627 IPR009091 -
Trre11g00978 1120 MobiDBLite consensus disorder prediction 1098 1120 - -
Trre11g00978 1120 MobiDBLite consensus disorder prediction 696 720 - -
Trre11g00978 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 442 452 IPR000408 -
Trre11g00978 1120 MobiDBLite consensus disorder prediction 144 229 - -
Trre11g00978 1120 MobiDBLite consensus disorder prediction 978 1028 - -
Trre11g00978 1120 FunFam PH, RCC1 and FYVE domains-containing protein 1 207 456 - -
Trre11g00978 1120 SUPERFAMILY PH domain-like 14 123 - -
Trre11g00978 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 297 345 IPR000408 -
Trre11g00978 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 466 513 IPR000408 -
Trre11g00978 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 572 619 IPR000408 -
Trre11g00978 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 404 452 IPR000408 -
Trre11g00978 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 349 400 IPR000408 -
Trre11g00978 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 518 567 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00978 Trre-Chr11 8779194 8786081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00978 1041 1111 Major Intrinsic Protein MIP AT1G31880 45.070 1.47e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00978 - - gmx:100805364 1832.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00978 11 8779194 8786081 Trre1g05282 1 58820947 58828865 PCT