Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00972 ATGGAAATTAATGAAAGTTTAGTTACCCCTTTAAACTACGAGCTAAATGAAGTTGATCATGTTAATCATGTAACCCCATTTGCCAAAGCTGGATGCTTTAGTTTGATGTCATTTTGGTGGTTGAATCCGTTGATGAAAACGGGTCAAGAGAAAACACTTCAGGACGAAGATATGCCAGAGTTGCGAGAGTCTGACCGAGCAGAAAAATGTTATGCATTGTTTATAGATCAACTGAATAGACAAGTGCAGCAGGATAAATCATCGCTGTCATTGGTTCTATGGACAATAATTTTGTGTCATCGTAGAGAGATTTTGATATCGGGATTCTATGCATTACTCAAGGTACTCGCAGTTTCTTTTTGTCCTGTGATTTTGAATGCCTTTATTTTGGTGGCCGAGGGTAATAAAAGTTCAAAATATGAAAGTTATGTATTAGCCGTCTCGCTTTTGTTTACGAAGATTTTAGAATCCCTATCTCAAAGGCAGTGGTATTTTCGCACTAGACTTATTGGTATGAAAATTAAATCATTACTCATCGCAGCCGTTTATAAGAAACAAATGAGGTTATCCAATGCTGCTAGATCGGTTCACTCCGGTGGTGAAATAATGAATTATGTGAATGTGGATGCTTATAGAGTCGGAGAATTTCCGTTTTGGTTTCACCATACATGGACAACAGCACTCCAACTATGTATTGCATTGGTAATTATTTTTCGTGCGGTTGGGCTCGCAACAATTGCATCATTCGTGGTGATAATTTTGACTGTGATTTTAAATACTCCATTGGCAAAGTTACAACATAAGTTTCTAAGCAAGCTTCTTGTGGCGCAAGATGAAAGGTTGAAAGCTAGTTCCGAAGCTCTAGTGAATGTTAAAGTGTTGAAGTTATATTCATGGGAAATACATTTTAAAAATGCTATCGAACGCTTAAGATACGTTGAACTCAAATGGTTATCTTCAGTGTTACTACAAAAAGCATACAATGTCATTCTATTTTGGTTTTCGCCATTTTTCATCTCTGCTGCAACATTCGGGGCATGTTACTTCTTTAAAGTTCCTCTACGTGCAAATAATCTTTTTACCTTTGTTGCAACAATACGCCTTTTGCAAGATCCGATTTCAACCATCCCAGATGTTATTGGAGTGATCATTCAAGCAAATATTGCATTTGCCCGAATTGTGAGATTCCTTGACGCGCCTGAGCTCCAGAATGCAAATTTTAGTAAGAGTTGCTTCGATGAGAAGTTAAACGGTTCAATTTTAATTGAATCTGCTGAATTTTCATGGGAATATAATATCTCGAAGCCGACAATAAGAAACATAGATTTAAAGGTTAGTGCTGGACAAAAGATAGCCATTTGTGGCGAAGTTGGCTCAGGTAAATCAACTCTCCTAGCAGCAATTCTCGGAGAAATCCCTAATACTAAGGGAAATATCGAAGTTTATGGCACGTTTGCTTATGTTTCTCAAACAGCATGGATACAAACAGGAACAATACAAGAAAATATTTTGTTTGGATCCGAGTTCGATGATCAAAGATATCAAGAAACAATACATAGGTCTTCACTAATAAAGGACCTTGAATTGTTTCCGTATGGTGATCTAACCGAAATAGGGGAGAGAGGTGTTAATCTAAGCGGGGGCCAAAAGCAGCGAATTCAACTTGCTCGGGCTTTTTATCAGAATGCCGATATATATCTCTTGGATGATCCATTCAGTGTTGTTGACGCGCACACTGCCACTAATTTGTTCAATGAATACATATTGGAAGGACTTGCCGGAAAGATAGTCCTTCTTGTGACTCATCAAGTCGACTTTCTTCCTGCATTTGATTCGGTTTTGTTGATGTCAAATGGAAAAATCCTGCAAGCTGCTCCTTACCATGATCTACTGACCTCTAGCCGAGAATTTACCGAACTTGTCAATGCTCACAAAGAGACTGCTGGTTCCAGTCAACTTGTAGATGTTACTTCATCGCTAAGACATTCAAGTTCCGATAGAGAGATTAAGGAAACTTTCATGGAGAAGCCGTTTAAAGCTTTAAACGGCAGTCAGTTAATTATGCAAGAAGAGAGGGAACAAGGCGACGCAGGGTTGAAGCCTTACTTACAATATCTCAATCAGAAAAGAGGCTACATATACTTTTTTCTCGGTTCTCTTTCTCACCTGATGTTTGTGATCTGCCAGATATTTCAAAACACGTGGATGGCTTCCGGTGTTGACGATCCTCAAATCAGCACATTACAATTAGTAGTAGTTTACTTGTTGATTGGAGTTATCTCTAATGTTTTCATGATAATCAGAAGTCTTCTTGTTGCTCTATTGGGTTTTCAATCATCAAAACATATATTCTCACAGCTAATGAACTCTCTTTTTCGAGCACCAATGTCTTTTTATGACTCTACACCTTTAGGAAGGATACTTAGTAGGGTTTCATCTGATTTGAGCATTGTGGATCTTGATATCTCATTTACCCTCACTTATGTCGTCGGATCAACTATATGTTGTTACATGGATCTTATAGTTTTAACATCTTTCACTTGGCAAGTCTTGTTTGTCACTATACCAATGGCTTATGTTATTGTAAAGTTACAGAGACACTACTATGCCTGTGCGAAAGAACTTATGCGGATGAATGGAACAACAAAATCATCTGTAGCTAATCATGTAGCTGAAACTTTTGCTGGAGCTATGACAATAAGGGCTTTTGAGGAAGAAGATCGTTTTCTCGAAAAGAATTTTAATCTAATTGATGTTAATGCCAGTGCTTTCTTTCACAGTTTTGCCTCAAATGAGCGGTTAATCCAACGTGTAGAAACTGCGTATGTCGTTGTTCTTGCCTCTGCGGCACTTTGCATTGCTATGCTTCCATTTGGGACCTTAACATCTGGATTTATCGGTATGGCACTTTCTTATGGCCTTTCGCTAAATGGTTCTTTAGTATATTCAATTCAAAGCCAATGCATTATGGCAAATTATATAGTATCTGTAGAAAGGATAAACCAATACACTCATATACGAAGTGAGGCTCAAGAAGGAAATATTCCTCCAGATAATTGGCCAGTTGTAGGCAAAGTAGAATTACGCGATTTACAGATACGATACAGGCCGAATGAACCACTTGTACTTCACGGTATCACTTGCATATTTGAAGGAGGGCACAAGATCGGTATAGTTGGTAGAACAGGCAGCGGAAAATCCACTCTGATAGGTGCTTTGTTTCGTCTTGTGGAGCCGGCGGGAGGAAAAATTTTAGTTGATGGCATAGACATCTCATCTATCTGCCTTAATGTTTTGAGGTCAAGTTTTGGTATTATACCTCAGGATCCTACCCTTTTCATTGGGACAGTTAGATATAATTTAGACCCTTTATCTCAACATTCTGATCAAGAAATATGGGAGGTTCTTCAAAAGTGTCAGTTGCGAGAGTCTATTAAAGATAAAGGAGGTTTAGATTCCTCAGTTGTCGAAGACGGATCAAACTGGAGCATTGGACAAAGGCAACTATTCTGTTTAGGGCGTGCTCTTTTGAGGCGAAGTAAGATATTGGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTTCAGAATACAATTAGAAAAGAGTTTGTTGATTGTACAGTGATAACAGTAGCACGCAGGATACCAACTGTGATGAATTGCAACATGGTTCTTTCCATAAGCGACGGAAAGTTGGTTGAGTATGATGAGCCAATGAAGTTAATGAAGAGAGAAAAATCATTGTTTGGACAACTTGTTAAGGAATATTGGTCTCATTTTCAATAG 3801 0.3828 MEINESLVTPLNYELNEVDHVNHVTPFAKAGCFSLMSFWWLNPLMKTGQEKTLQDEDMPELRESDRAEKCYALFIDQLNRQVQQDKSSLSLVLWTIILCHRREILISGFYALLKVLAVSFCPVILNAFILVAEGNKSSKYESYVLAVSLLFTKILESLSQRQWYFRTRLIGMKIKSLLIAAVYKKQMRLSNAARSVHSGGEIMNYVNVDAYRVGEFPFWFHHTWTTALQLCIALVIIFRAVGLATIASFVVIILTVILNTPLAKLQHKFLSKLLVAQDERLKASSEALVNVKVLKLYSWEIHFKNAIERLRYVELKWLSSVLLQKAYNVILFWFSPFFISAATFGACYFFKVPLRANNLFTFVATIRLLQDPISTIPDVIGVIIQANIAFARIVRFLDAPELQNANFSKSCFDEKLNGSILIESAEFSWEYNISKPTIRNIDLKVSAGQKIAICGEVGSGKSTLLAAILGEIPNTKGNIEVYGTFAYVSQTAWIQTGTIQENILFGSEFDDQRYQETIHRSSLIKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARAFYQNADIYLLDDPFSVVDAHTATNLFNEYILEGLAGKIVLLVTHQVDFLPAFDSVLLMSNGKILQAAPYHDLLTSSREFTELVNAHKETAGSSQLVDVTSSLRHSSSDREIKETFMEKPFKALNGSQLIMQEEREQGDAGLKPYLQYLNQKRGYIYFFLGSLSHLMFVICQIFQNTWMASGVDDPQISTLQLVVVYLLIGVISNVFMIIRSLLVALLGFQSSKHIFSQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDISFTLTYVVGSTICCYMDLIVLTSFTWQVLFVTIPMAYVIVKLQRHYYACAKELMRMNGTTKSSVANHVAETFAGAMTIRAFEEEDRFLEKNFNLIDVNASAFFHSFASNERLIQRVETAYVVVLASAALCIAMLPFGTLTSGFIGMALSYGLSLNGSLVYSIQSQCIMANYIVSVERINQYTHIRSEAQEGNIPPDNWPVVGKVELRDLQIRYRPNEPLVLHGITCIFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKILVDGIDISSICLNVLRSSFGIIPQDPTLFIGTVRYNLDPLSQHSDQEIWEVLQKCQLRESIKDKGGLDSSVVEDGSNWSIGQRQLFCLGRALLRRSKILVLDEATASIDNATDLILQNTIRKEFVDCTVITVARRIPTVMNCNMVLSISDGKLVEYDEPMKLMKREKSLFGQLVKEYWSHFQ 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00972 1266 FunFam ABC transporter C family member 5 678 1010 - -
Trre11g00972 1266 Pfam ABC transporter 439 572 IPR003439 GO:0005524
Trre11g00972 1266 SUPERFAMILY ABC transporter transmembrane region 93 400 IPR036640 GO:0005524|GO:0016020
Trre11g00972 1266 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 28 1259 - -
Trre11g00972 1266 FunFam ABC transporter C family member 10 88 401 - -
Trre11g00972 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 643 IPR027417 -
Trre11g00972 1266 FunFam ABC transporter C family member 5 409 652 - -
Trre11g00972 1266 Gene3D - 398 661 IPR027417 -
Trre11g00972 1266 FunFam ABC transporter C family member 3 1009 1260 - -
Trre11g00972 1266 Pfam ABC transporter transmembrane region 105 372 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00972 1266 Pfam ABC transporter transmembrane region 713 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00972 1266 ProSitePatterns ABC transporters family signature. 545 559 IPR017871 GO:0005524|GO:0016887
Trre11g00972 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 716 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00972 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1019 1255 IPR027417 -
Trre11g00972 1266 CDD ABCC_MRP_domain1 420 620 - -
Trre11g00972 1266 Pfam ABC transporter 1044 1190 IPR003439 GO:0005524
Trre11g00972 1266 Gene3D ABC transporter type 1, transmembrane domain 77 397 IPR036640 GO:0005524|GO:0016020
Trre11g00972 1266 Gene3D ABC transporter type 1, transmembrane domain 679 1010 IPR036640 GO:0005524|GO:0016020
Trre11g00972 1266 SUPERFAMILY ABC transporter transmembrane region 701 1009 IPR036640 GO:0005524|GO:0016020
Trre11g00972 1266 Gene3D - 1011 1260 IPR027417 -
Trre11g00972 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1028 1259 IPR003439 GO:0005524
Trre11g00972 1266 CDD ABC_6TM_ABCC_D1 106 393 IPR044746 GO:0140359
Trre11g00972 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 420 643 IPR003439 GO:0005524
Trre11g00972 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 105 385 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00972 1266 CDD ABCC_MRP_domain2 1024 1243 - -
Trre11g00972 1266 CDD ABC_6TM_ABCC_D2 711 1004 IPR044726 GO:0140359
Trre11g00972 1266 SMART AAA_5 447 620 IPR003593 GO:0016887
Trre11g00972 1266 SMART AAA_5 1052 1219 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00972 Trre-Chr11 8710499 8715510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00972 393 676 Calmodulin-binding Proteins AT2G36910 28.013 1.30e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00972 K05666 - gmx:100811468 1899.4