Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00969 ATGAAGGATTTTCGGAGCCTAATTTGCGGAGACTCGAGCTGTTCTGAGACTAGAGGAAATCCTTTCTGTTATGATTTCAATAGTTTGAAAGATCCTTCTTCATGCAATAACCATTTCTTGGTAATTTTCTTTGATTTGATCATGCTGACTATGCTGTCATTCATGATGTTCGTAAAGTTTTCTTCGAGACCCTTTTGGAGTCGATTAAGATATTCAAACTTGCAGCTAGTTTCTGCCATAGCCAATGGCTCTCTTGGTTTGTTACATTTATGCTTAGGAGTTTGGGATTTAGAGGAGACATTAAGGAAAACTCACAAAGCATTTCCTCTTAATTGGTGGTTAGTAGAACTCTTTCATGGTTTCACTTGGTTCGTTGTAAGTTTAACCGTTAGTCTTCAGATAAAACAACCTCGAAGAGCATGGTTATGGCTGTTTTCTATTCTCGCGTTCTTCGCTTCTGGTATATTATGTGTTTTATCAATGTCTTATGCAATTGAAAGAAGAGAATTGTCCGTCAAGGCAGCTTTAGATGTTATATCTTTTCTAGGATCAACTTTGCTTTTGTTATGTACTTATAAAGCATGTAATCGTGAAGATTGCGATGCAGACCGAGAAACTGCTGAAAGGCTTTATGCTCCCTTGAATGGCGAGTTCAATGATGTTTCTGACTGTCATGTCACGCCATTTGCGAAAGCTGGATTCTTTAGTAAGATATCGTTTTGGTGGTTGAATCCATTGATTAAAAAGGGTCAAGAAAAAACACTTCAGGACGAGGATATTCCAAAGTTAAGAGCATCCGAACGAGCAGAAAGTTGTTATTTGTCATTTGTAGAAGAATTAAGGATACAAAGAGAAAAAGAACCATCATCACATTCATCGGTATTATGGACAATAATAATGTGCCACCGAAGAGAGATTTTGATAACAGGATTCTTTGCTTTGCTCAAGATACTTGCTATATCTTGCGGCCCTCTACTTCTAAATGCCTTTATTTTGGTTTCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTATGTATTGGCCATATCACTCTTCTTCATAAAGATCGTAGAATCCTTAGCACAAAGACAATGGTATTTTTGCAGTAGAATTGTTGGGATGAAAGTTAGGTCACTACTTACGGCAAACATTTATAAAAAAACATTAAGGCTATCCAATTCTGCTAGATTGGTTCACTCTGGCGGTGAGATAATGAATTATATGACCGTGGATGCATATAGAATTGGAGAATTTCCATTCTGGTTTCACCAAACATGGACAACAATCCTCCAATTGTGTATTGCATTAGTAATTCTTTTCCGAGCAATTGGACTCGCAACAATAGCTTCAATGGTTGTGATAGTTCTCACTGTGCTTTGCAACACTCCACTAGCAAAGTTACAACACAAGTTTCAGAGCGAACTTATGGTGGCACAAGACGAGAGATTGAAGGCTAGTTCTGAGGCACTTGTGAATATGAAAGTGCTAAAGCTATATGCATGGGAAAATCATTTTAAAAGTGCTATAGAAAAGTTAAGAAATGCGGAACTTAAATTAATATCTGCAGTGCAATTAAGTAAGGCGTACCTTCTCTTTCTCTTTTGGACCTCGCCGGTGTTGGTGTCTGCTGCTTCTTTTCTAGCATGTTACTTCCTTAAAGTTCCTTTGCACGCAAGTAATGTTTTTACTTTCGTCGCAACTCTACGCCTTGTTCAAGAGCCAATTACAGGTATCCCGGATGTCATTACGGTGATCATTCAAGCAAAAGTTGCATTTGCTCGGATTAGTAATTTCCTTGAGGCACCAGAAGTACAGAATGCAAAATTCAAGAATAAGTGCTTTAAGGACGACCACAAAGGCTCGGTTTTAATAACATCAGCTGACTTTTCATGGGAAGGTAATGTATCAAAGCCAACACTAAGAAACATAAATTTGGATGTTAGACACGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACACTTTTAGCAACAATTCTAGGAGAAGTTCCTAATACAAAGGGAACTATTGGTGTTTATGGGAAGTTTGCATATGTTTCTCAAACAGCATGGATCCAAACCGGTACAATTCGAGAAAATGTTTTGTTTGGATCTGAATTGGATGATCAAAGATATCAAGAAACACTTCAAAGATCTTCATTGGTAGCGGACCTCGAGTTGCTTCCCTATGGTGACCTCACTGAAATAGGCGAGAGAGGAGTTAATTTAAGTGGAGGTCAGAAGCAGCGAATTCAACTAGCTCGGGCTCTTTATGAGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCCGTTGATGCGCATACTGCAAAAAGTTTATTTAATGAATACATCATGGAAGGACTCAAAGGGAAAACTGTCTTACTCGTAACTCATCAAGTCGACTTTCTCCCGGCGTTTGATTCAATTTTGTTGATGTCAGACGGGGTAATCCTACAAGCCGGTTTATATAACCACTTATTAATCACAAGCCAAGAATTCCAAGACCTTGTCAATGCTCACAAGGAGACTGCTGGTTCAAACCAGCCTATGAATTTTACTTTAACACAAACTTCTAAAAAGGTTACACAAACTTTCGTCGAAAAGCAGATTATAGAAACAAATGGAAACCAATTGATTAAGCAAGAAGAAAGAGAGAAAGGAGACACAGGATTGAAGCCTTACATACAATATATGAATCAGATGAAAGGCTATATATTCTTCTTTGTGGCTTCACTTGCACACCTTATTTTTGTGGTTTGTCAGATACTACAAAACTCATGGATGGCTGCTAATGTTGACAATCCTTGCGTCAGCACGTTGCGGTTGATTTTAGTTTACTTCCTAATTGGAGTTTCTTCAGCATTTTTCATGTTAACCAGAAGTCTCTTTATAGTTGCTTTAGGTCTTCAATCTTCAAAGTACTTATTTTTACAGTTCATGAACTCCCTCTTTCGCGCACCAATGTCTTTTTATGACTCTACACCTTTGGGAAGGATACTAAGTAGGGTTTCATCTGATCTGAGCATGATGGATGTTGATATTCCATTTAGCCTCGCTTTTTCGGTGGGAGGAACTATGAATTTTTGTTCTAGTCTTGCTGTTTTAGCAGTTGTCACTTGGCAAGTATTGATTGTGGCTATACCAATGGTTTATGTTACAATTCGCTTGAAGACATACTACATTGCCGCAGCAAAAGAAGTAATGCGGATGAATGGCACAACAAAATCTTACTTAGCTAATCATGTAGCTGAAACTGTTGCCGGAGCTGTGACAATAAGGGCTTTTGATGAGGAAAATCGTTTTTTTAAGAAGAATCTTGATCTAATTGACATTAATGCTAGTGCATTTTTTCATAATTTTGCCTCAAACGAGTGGCTGATCCTACGGTTAGAAACAATAAGCGCAGCTCTTCTTTCCTCAGCAGCGCTATGCATGGTCATACTTCCACCAGGAACTTTTAGCTCTGGATTCATCGGTATGGCTCTATCTTATGGCCTTACACTAAATTCTTCCTTGGTATATTCAATTCAAAGCCAATGCACTATTGCAAGTCAGATAATATCGGTAGAGAGGTTAAATCAATATATGCATATACAAAGTGAGGCCGAAGAAATAGTCGAAGGGAATCGTCCTCCTCTGAATTGGCCAGTTGCTGGCAAAGTAGAAATAAAAGACTTGAAGATACGATACAGGCCCGATGGACCACTTGTACTTCACGGGATCACATGCATATTTGAAGCAGGTCACAAGATTGGTATTGTTGGCAGAACAGGAAGTGGGAAATCGACACTTATCAGTGCTTTATTTCGTCTTGTGGAACCGGCAGGAGGAAACATCATAGTTGATGGAATAGACATCTCATCTACCGGCCTTCATGATTTGAGGTCGCGTTTTGGGATTATACCTCAAGATCCTACCCTTTTTAACGGGACATTAAGATATAACTTAGACCCTTTATCTCAACACACCGATAAAGACATATGGGAGGTTCTCGGAAAGTGCCAATTGCGCGAAGTTGTCCAAGAGAAAGACAAGGGCTTAAACTCGTCAGTTGTTGAAGATGGATCGAACTGGAGCATGGGACAAAGGCAGTTATTTTGTTTGGGGCGTGCGCTTTTGCGAAGAAGTAGGATATTGGTGTTGGACGAAGCAACTGCTTCTATTGATAATTCTACTGATATGATTCTGCAAAAAACGATTAGAACCGAGTTTGCGGATTGTACTGTGATCACAGTAGCACACAGGATACCAACCGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAATTGGCGGAGTATGACGAACCAATGAGCTTGATGAAGAGAGAAGAATCATTGTTCAGGAAGCTTGTCAAGGAATACTGGTCTCATTTTCAGTCTGCAGAATCGCATTGA 4422 0.391 MKDFRSLICGDSSCSETRGNPFCYDFNSLKDPSSCNNHFLVIFFDLIMLTMLSFMMFVKFSSRPFWSRLRYSNLQLVSAIANGSLGLLHLCLGVWDLEETLRKTHKAFPLNWWLVELFHGFTWFVVSLTVSLQIKQPRRAWLWLFSILAFFASGILCVLSMSYAIERRELSVKAALDVISFLGSTLLLLCTYKACNREDCDADRETAERLYAPLNGEFNDVSDCHVTPFAKAGFFSKISFWWLNPLIKKGQEKTLQDEDIPKLRASERAESCYLSFVEELRIQREKEPSSHSSVLWTIIMCHRREILITGFFALLKILAISCGPLLLNAFILVSEGNESFKYEGYVLAISLFFIKIVESLAQRQWYFCSRIVGMKVRSLLTANIYKKTLRLSNSARLVHSGGEIMNYMTVDAYRIGEFPFWFHQTWTTILQLCIALVILFRAIGLATIASMVVIVLTVLCNTPLAKLQHKFQSELMVAQDERLKASSEALVNMKVLKLYAWENHFKSAIEKLRNAELKLISAVQLSKAYLLFLFWTSPVLVSAASFLACYFLKVPLHASNVFTFVATLRLVQEPITGIPDVITVIIQAKVAFARISNFLEAPEVQNAKFKNKCFKDDHKGSVLITSADFSWEGNVSKPTLRNINLDVRHGQKVAICGEVGSGKSTLLATILGEVPNTKGTIGVYGKFAYVSQTAWIQTGTIRENVLFGSELDDQRYQETLQRSSLVADLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYENADIYLLDDPFSAVDAHTAKSLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSILLMSDGVILQAGLYNHLLITSQEFQDLVNAHKETAGSNQPMNFTLTQTSKKVTQTFVEKQIIETNGNQLIKQEEREKGDTGLKPYIQYMNQMKGYIFFFVASLAHLIFVVCQILQNSWMAANVDNPCVSTLRLILVYFLIGVSSAFFMLTRSLFIVALGLQSSKYLFLQFMNSLFRAPMSFYDSTPLGRILSRVSSDLSMMDVDIPFSLAFSVGGTMNFCSSLAVLAVVTWQVLIVAIPMVYVTIRLKTYYIAAAKEVMRMNGTTKSYLANHVAETVAGAVTIRAFDEENRFFKKNLDLIDINASAFFHNFASNEWLILRLETISAALLSSAALCMVILPPGTFSSGFIGMALSYGLTLNSSLVYSIQSQCTIASQIISVERLNQYMHIQSEAEEIVEGNRPPLNWPVAGKVEIKDLKIRYRPDGPLVLHGITCIFEAGHKIGIVGRTGSGKSTLISALFRLVEPAGGNIIVDGIDISSTGLHDLRSRFGIIPQDPTLFNGTLRYNLDPLSQHTDKDIWEVLGKCQLREVVQEKDKGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDMILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLAEYDEPMSLMKREESLFRKLVKEYWSHFQSAESH 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00969 1473 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 914 1190 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00969 1473 FunFam ABC transporter C family member 10 290 603 - -
Trre11g00969 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 845 IPR027417 -
Trre11g00969 1473 SUPERFAMILY ABC transporter transmembrane region 911 1209 IPR036640 GO:0005524|GO:0016020
Trre11g00969 1473 ProSitePatterns ABC transporters family signature. 747 761 IPR017871 GO:0005524|GO:0016887
Trre11g00969 1473 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 587 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00969 1473 CDD ABCC_MRP_domain2 1225 1445 - -
Trre11g00969 1473 Gene3D ABC transporter type 1, transmembrane domain 875 1209 IPR036640 GO:0005524|GO:0016020
Trre11g00969 1473 Gene3D ABC transporter type 1, transmembrane domain 278 604 IPR036640 GO:0005524|GO:0016020
Trre11g00969 1473 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1227 1461 IPR003439 GO:0005524
Trre11g00969 1473 CDD ABC_6TM_ABCC_D1 308 595 IPR044746 GO:0140359
Trre11g00969 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1217 1460 IPR027417 -
Trre11g00969 1473 Pfam ABC transporter 640 774 IPR003439 GO:0005524
Trre11g00969 1473 Gene3D - 617 851 IPR027417 -
Trre11g00969 1473 CDD ABCC_MRP_domain1 622 821 - -
Trre11g00969 1473 FunFam ABC transporter C family member 10 605 858 - -
Trre11g00969 1473 FunFam ABC transporter C family member 5 877 1208 - -
Trre11g00969 1473 SUPERFAMILY ABC transporter transmembrane region 295 600 IPR036640 GO:0005524|GO:0016020
Trre11g00969 1473 Pfam ABC transporter transmembrane region 911 1169 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00969 1473 Pfam ABC transporter transmembrane region 307 569 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00969 1473 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 229 1461 - -
Trre11g00969 1473 Gene3D - 1211 1462 IPR027417 -
Trre11g00969 1473 Pfam ABC transporter 1244 1392 IPR003439 GO:0005524
Trre11g00969 1473 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 845 IPR003439 GO:0005524
Trre11g00969 1473 SMART AAA_5 649 822 IPR003593 GO:0016887
Trre11g00969 1473 SMART AAA_5 1253 1436 IPR003593 GO:0016887
Trre11g00969 1473 FunFam ABC transporter C family member 3 1210 1462 - -
Trre11g00969 1473 CDD ABC_6TM_ABCC_D2 909 1202 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00969 Trre-Chr11 8690935 8696700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00969 616 853 Calmodulin-binding Proteins AT2G36910 30.739 2.76e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00969 K05666 - gmx:100787314 2284.22