Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00968 ATGAAGGATTTTCGGAGCCTAATTTGCGGAGACTCGAGCTGTTCTGAGACTAGAGGAAATCCTTTCTGTTATGATTTCAATAGTTTGAAAGATCCTTCTTCATGCAATAACCATTTCTTGGTAATTTTCTTTGATTTGATCATGCTGACTATGCTGTCATTCATGATGTTCGTAAAGTTTTCTTCGAGACCCTTTTGGAGTCGATTAAGATATTCAAACTTGCAGCTAGTTTCTGCCATAGCCAATGGCTCTCTTGGTTTGTTACATTTATGCTTAGGAGTTTGGGATTTAGAGGAGACATTAAGGAAAACTCACAAAGCATTTCCTCTTAATTGGTGGTTAGTAGAACTCTTTCATGGTTTCACTTGGTTCGTTGTAAGTTTAACCGTTAGTCTTCAGATAAAACAACCTCGAAGAGCATGGTTATGGCTGTTTTCTATTCTCGCGTTCTTCGCTTCTGGTATATTATGTGTTTTATCAATGTCTTATGCAATTGAAAGAAGAGAATTGTCCGTCAAGGCAGCTTTAGATGTTATATCTTTTCTAGGATCAACTTTGCTTTTGTTATGTACTTATAAAGCATGTAATCGTGAAGATTGCGATGCAGACCGAGAAACTGCTGAAAGGCTTTATGCTCCCTTGAATGGCGAGTTCAATGATGTTTCTGACTGTCATGTCACGCCATTTGCGAAAGCTGGATTCTTTAGTAAGATATCGTTTTGGTGGTTGAATCCATTGATTAAAAAGGGTCAAGAAAAAACACTTCAGGACGAGGATATTCCAAAGTTAAGAGCATCCGAACGAGCAGAAAGTTGTTATTTGTCATTTGTAGAAGAATTAAGGATACAAAGAGAAAAAGAACCATCATCACATTCATCGGTATTATGGACAATAATAATGTGCCACCGAAGAGAGATTTTGATAACAGGATTCTTTGCTTTGCTCAAGATACTTGCTATATCTTGCGGCCCTCTACTTCTAAATGCCTTTATTTTGGTTTCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTATGTATTGGCCATATCACTCTTCTTCATAAAGATCGTAGAATCCTTAGCACAAAGACAATGGTATTTTTGCAGTAGAATTGTTGGGATGAAAGTTAGGTCACTACTTACGGCAAACATTTATAAAAAAACATTAAGGCTATCCAATTCTGCTAGATTGGTTCACTCTGGCGGTGAGATAATGAATTATATGACCGTGGATGCATATAGAATTGGAGAATTTCCATTCTGGTTTCACCAAACATGGACAACAATCCTCCAATTGTGTATTGCATTAGTAATTCTTTTCCGAGCAATTGGACTCGCAACAATAGCTTCAATGGTTGTGATAGTTCTCACTGTGCTTTGCAACACTCCACTAGCAAAGTTACAACACAAGTTTCAGAGCGAACTTATGGTGGCACAAGACGAGAGATTGAAGGCTAGTTCTGAGGCACTTGTGAATATGAAAGTGCTAAAGCTATATGCATGGGAAAATCATTTTAAAAGTGCTATAGAAAAGTTAAGAAATGCGGAACTTAAATTAATATCTGCAGTGCAATTAAGTAAGGCGTACCTTCTCTTTCTCTTTTGGACCTCGCCGGTGTTGGTGTCTGCTGCTTCTTTTCTAGCATGTTACTTCCTTAAAGTTCCTTTGCACGCAAGTAATGTTTTTACTTTCGTCGCAACTCTACGCCTTGTTCAAGAGCCAATTACAGGTATCCCGGATGTCATTACGGTGATCATTCAAGCAAAAGTTGCATTTGCTCGGATTAGTAATTTCCTTGAGGCACCAGAAGTACAGAATGCAAAATTCAAGAATAAGTGCTTTAAGGACGACCACAAAGGCTCGGTTTTAATAACATCAGCTGACTTTTCATGGGAAGGTAATGTATCAAAGCCAACACTAAGAAACATAAATTTGGATGTTAGACACGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACACTTTTAGCAACAATTCTAGGAGAAGTTCCTAATACAAAGGGAACTATTGGTGTTTATGGGAAGTTTGCATATGTTTCTCAAACAGCATGGATCCAAACCGGTACAATTCGAGAAAATGTTTTGTTTGGATCTGAATTGGATGATCAAAGATATCAAGAAACACTTCAAAGATCTTCATTGGTAGCGGACCTCGAGTTGCTTCCCTATGGTGACCTCACTGAAATAGGCGAGAGAGGAGTTAATTTAAGTGGAGGTCAGAAGCAGCGAATTCAACTAGCTCGGGCTCTTTATGAGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCCGTTGATGCGCATACTGCAAAAAGTTTATTTAATGAATACATCATGGAAGGACTCAAAGGGAAAACTGTCTTACTCGTAACTCATCAAGTCGACTTTCTCCCGGCGTTTGATTCAATTTTGTTGATGTCAGACGGGGTAATCCTACAAGCCGGTTTATATAACCACTTATTAATCACAAGCCAAGAATTCCAAGACCTTGTCAATGCTCACAAGGAGACTGCTGGTTCAAACCAGCCTATGAATTTTACTTTAACACAAACTTCTAAAAAGATACTACAAAACTCATGGATGGCTGCTAATGTTGACAATCCTTGCGTCAGCACGTTGCGGTTGATTTTAGTTTACTTCCTAATTGGAGTTTCTTCAGCATTTTTCATGTTAACCAGAAGTCTCTTTATAGTTGCTTTAGGTCTTCAATCTTCAAAGTACTTATTTTTACAGTTCATGAACTCCCTCTTTCGCGCACCAATGTCTTTTTATGACTCTACACCTTTGGGAAGGATACTAAGTAGGGTTTCATCTGATCTGAGCATGATGGATGTTGATATTCCATTTAGCCTCGCTTTTTCGGTGGGAGGAACTATGAATTTTTGTTCTAGTCTTGCTGTTTTAGCAGTTGTCACTTGGCAAGTATTGATTGTGGCTATACCAATGGTTTATGTTACAATTCGCTTGAAGACATACTACATTGCCGCAGCAAAAGAAGTAATGCGGATGAATGGCACAACAAAATCTTACTTAGCTAATCATGTAGCTGAAACTGTTGCCGGAGCTGTGACAATAAGGGCTTTTGATGAGGAAAATCGTTTTTTTAAGAAGAATCTTGATCTAATTGACATTAATGCTAGTGCATTTTTTCATAATTTTGCCTCAAACGAGTGGCTGATCCTACGGTTAGAAACAATAAGCGCAGCTCTTCTTTCCTCAGCAGCGCTATGCATGGTCATACTTCCACCAGGAACTTTTAGCTCTGGATTCATCGGTATGGCTCTATCTTATGGCCTTACACTAAATTCTTCCTTGGTATATTCAATTCAAAGCCAATGCACTATTGCAAGTCAGATAATATCGGTAGAGAGGTTAAATCAATATATGCATATACAAAGTGAGGCCGAAGAAATAGTCGAAGGGAATCGTCCTCCTCTGAATTGGCCAGTTGCTGGCAAAGTAGAAATAAAAGACTTGAAGATACGATACAGGCCCGATGGACCACTTGTACTTCACGGGATCACATGCATATTTGAAGCAGGTCACAAGATTGGTATTGTTGGCAGAACAGGAAGTGGGAAATCGACACTTATCAGTGCTTTATTTCGTCTTGTGGAACCGGCAGGAGGAAACATCATAGTTGATGGAATAGACATCTCATCTACCGGCCTTCATGATTTGAGGTCGCGTTTTGGGATTATACCTCAAGATCCTACCCTTTTTAACGGGACATTAAGATATAACTTAGACCCTTTATCTCAACACACCGATAAAGACATATGGGAGGTTCTCGGAAAGTGCCAATTGCGCGAAGTTGTCCAAGAGAAAGACAAGGGCTTAAACTCGTCAGTTGTTGAAGATGGATCGAACTGGAGCATGGGACAAAGGCAGTTATTTTGTTTGGGGCGTGCGCTTTTGCGAAGAAGTAGGATATTGGTGTTGGACGAAGCAACTGCTTCTATTGATAATTCTACTGATATGATTCTGCAAAAAACGATTAGAACCGAGTTTGCGGATTGTACTGTGATCACAGTAGCACACAGGATACCAACCGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAATTGGCGGAGTATGACGAACCAATGAGCTTGATGAAGAGAGAAGAATCATTGTTCAGGAAGCTTGTCAAGGAATACTGGTCTCATTTTCAGTCTGCAGAATCGCATTGA 4239 0.3928 MKDFRSLICGDSSCSETRGNPFCYDFNSLKDPSSCNNHFLVIFFDLIMLTMLSFMMFVKFSSRPFWSRLRYSNLQLVSAIANGSLGLLHLCLGVWDLEETLRKTHKAFPLNWWLVELFHGFTWFVVSLTVSLQIKQPRRAWLWLFSILAFFASGILCVLSMSYAIERRELSVKAALDVISFLGSTLLLLCTYKACNREDCDADRETAERLYAPLNGEFNDVSDCHVTPFAKAGFFSKISFWWLNPLIKKGQEKTLQDEDIPKLRASERAESCYLSFVEELRIQREKEPSSHSSVLWTIIMCHRREILITGFFALLKILAISCGPLLLNAFILVSEGNESFKYEGYVLAISLFFIKIVESLAQRQWYFCSRIVGMKVRSLLTANIYKKTLRLSNSARLVHSGGEIMNYMTVDAYRIGEFPFWFHQTWTTILQLCIALVILFRAIGLATIASMVVIVLTVLCNTPLAKLQHKFQSELMVAQDERLKASSEALVNMKVLKLYAWENHFKSAIEKLRNAELKLISAVQLSKAYLLFLFWTSPVLVSAASFLACYFLKVPLHASNVFTFVATLRLVQEPITGIPDVITVIIQAKVAFARISNFLEAPEVQNAKFKNKCFKDDHKGSVLITSADFSWEGNVSKPTLRNINLDVRHGQKVAICGEVGSGKSTLLATILGEVPNTKGTIGVYGKFAYVSQTAWIQTGTIRENVLFGSELDDQRYQETLQRSSLVADLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYENADIYLLDDPFSAVDAHTAKSLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSILLMSDGVILQAGLYNHLLITSQEFQDLVNAHKETAGSNQPMNFTLTQTSKKILQNSWMAANVDNPCVSTLRLILVYFLIGVSSAFFMLTRSLFIVALGLQSSKYLFLQFMNSLFRAPMSFYDSTPLGRILSRVSSDLSMMDVDIPFSLAFSVGGTMNFCSSLAVLAVVTWQVLIVAIPMVYVTIRLKTYYIAAAKEVMRMNGTTKSYLANHVAETVAGAVTIRAFDEENRFFKKNLDLIDINASAFFHNFASNEWLILRLETISAALLSSAALCMVILPPGTFSSGFIGMALSYGLTLNSSLVYSIQSQCTIASQIISVERLNQYMHIQSEAEEIVEGNRPPLNWPVAGKVEIKDLKIRYRPDGPLVLHGITCIFEAGHKIGIVGRTGSGKSTLISALFRLVEPAGGNIIVDGIDISSTGLHDLRSRFGIIPQDPTLFNGTLRYNLDPLSQHTDKDIWEVLGKCQLREVVQEKDKGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDMILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLAEYDEPMSLMKREESLFRKLVKEYWSHFQSAESH 1412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00968 1412 FunFam ABC transporter C family member 3 1149 1401 - -
Trre11g00968 1412 FunFam ABC transporter C family member 10 605 858 - -
Trre11g00968 1412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 845 IPR027417 -
Trre11g00968 1412 ProSitePatterns ABC transporters family signature. 747 761 IPR017871 GO:0005524|GO:0016887
Trre11g00968 1412 Gene3D ABC transporter type 1, transmembrane domain 850 1148 IPR036640 GO:0005524|GO:0016020
Trre11g00968 1412 Gene3D ABC transporter type 1, transmembrane domain 278 604 IPR036640 GO:0005524|GO:0016020
Trre11g00968 1412 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 587 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00968 1412 FunFam ABC transporter C family member 10 290 603 - -
Trre11g00968 1412 CDD ABC_6TM_ABCC_D2 872 1141 IPR044726 GO:0140359
Trre11g00968 1412 Gene3D - 1150 1401 IPR027417 -
Trre11g00968 1412 CDD ABC_6TM_ABCC_D1 308 595 IPR044746 GO:0140359
Trre11g00968 1412 Gene3D - 617 849 IPR027417 -
Trre11g00968 1412 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1166 1400 IPR003439 GO:0005524
Trre11g00968 1412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1156 1399 IPR027417 -
Trre11g00968 1412 SMART AAA_5 1192 1375 IPR003593 GO:0016887
Trre11g00968 1412 SMART AAA_5 649 822 IPR003593 GO:0016887
Trre11g00968 1412 CDD ABCC_MRP_domain1 622 821 - -
Trre11g00968 1412 CDD ABCC_MRP_domain2 1164 1384 - -
Trre11g00968 1412 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 858 1400 - -
Trre11g00968 1412 Pfam ABC transporter transmembrane region 883 1108 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00968 1412 Pfam ABC transporter transmembrane region 307 569 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00968 1412 Pfam ABC transporter 640 774 IPR003439 GO:0005524
Trre11g00968 1412 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 845 IPR003439 GO:0005524
Trre11g00968 1412 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 887 1129 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00968 1412 FunFam ABC transporter C family member 5 836 1147 - -
Trre11g00968 1412 Pfam ABC transporter 1183 1331 IPR003439 GO:0005524
Trre11g00968 1412 SUPERFAMILY ABC transporter transmembrane region 874 1148 IPR036640 GO:0005524|GO:0016020
Trre11g00968 1412 SUPERFAMILY ABC transporter transmembrane region 295 600 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00968 Trre-Chr11 8690935 8696700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00968 616 876 Calmodulin-binding Proteins AT2G36910 28.929 2.12e-23 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00968 K05666 - gmx:100811468 1992.24