Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00967 ATGTTCCGAAAGTTTTCCTCGAGACCTGTTTGTGGTCTAGTAAGATATTCGAACTTGCAGCTAGTTTCTGCCATAACCAATGGCTCTCTTGGATTGTTGCATTTATGCATAGGAATTTGGGTTTTAGAGGAAACATTAAGGAAAAATCACAAAGCCTTTCCTCTTAACTTGTGGTTGCTAGAACTCTTTCATGGCCTCACATGGTTGTTTGTAACTTGTGCTGCAAGTCTTCAAATAAAACAACTCTCAAGAGAATGGATATGGTTATTCTCCATTCTCATCAGTTTTGTTTCTGGTGTATTATGTTTTTTATCCATATCCTATGCAATTGGTAGCAGAGAACTATCCCTCAAGGCAAGTTTAGATATCATATCTTTTTTAGGAGCATCTTTGCTGCTGTTGTGCACTTACAAAACATGTAAACGCGATGATGCTCGCAGAGACACATTCGATAGCCAGTTAACCCCATTTGCTAAAGCTGGATTCTTTAGTAAGATGTCGTTTTGGTGGTTGAATCCGTTGATGAAAAAGGGTCAAGAAAAAACACTTCCAGATGAGGATATTCCAAAGTTAAGAGTGTCCGAACGAGCAGAAAGTTGTTATTTGTCATTTGTAGAACAATCAAGGAAACAAAGAGGAAAAGAACCATCATCACATTCAACAATTTTTTGGACAATAGTTTCATGCCACCAAAGAGAGATTTTGATAACAGGATTGTTTGCTTTGCTTAAGGTACTTGCTATATCTTGCGGCCCTCTACTTCTAAATGCCTTTATACTGGTTTCCGAGGGTAATGAAAGTTTCAAATATGAAGGTTATGTATTGGCCATATCACTCTTCTTCATAAAGATCATAGAATCCTTAGCACAAAGACAATGGTATTTCCGAAGTAGGGTTGTTGGGATGAAAGTTAGATCGCTACTTACCGCAAAAATTTATAAAAAGATGTTAAGGCTATCCAATTCTGCTAGATTGATTCACTCTAGCGGCGAGATAATGAATTATATGACAGTGGATGCTTATAGAATTGGAGAATTTCCGTATTGGTTTCATAGGACTTGGACAACAATTCTCCAATTGTCTATTGCTTTAATAATTCTTTTCCGCGCAATTGGACTAGCAACACTAGCATCATTACCGGTGCTAGTTCTAACCGTATTTTGCAATGCTCCACTGTCAAAGCTGCATCACAAGTTTCACTGCAAGCTTATGGGGGCGCAAGATGCGAGATTGAAGGCTAGTTCTGAGGCTCTAGTGAATATGAAAGTTCTAAAGCTATATGCATGGGAAACTCATTTTAAAAATGCAATAGAAAAGTTACGAAATGTGGAACTGAAATTGCTATCTGCGGTACTATTAAGAAAGACTTATGTTGTCTTTCTCTTTTGGACCTCGCCAGTTATGGTATCTGCTGCTTCTTTCCTAGCATGTTACTTGCTGAAGATTCCTTTGCATGCAAGTAATGTTTTCACATTTGTAGCAACGTTACGCCTTGTTCAAGAGCTAATTACAGGCATCCCGGATGTTATTGCGGTAATCATTCAAGCAAATGTTTCATTTGCTCGAATTGGTAACTTTCTCGAGACACCAGAACTGCATAGTTCAAATTTCAATAATAGGGGCATTGATGACAACCTCAAAGGCTCAGTTTTAATAAAATCAGGTGACTTTTCATGGGAAGGTAATGCATCAAAGGCAACACTACGGAGCATAAATTTAGAGGTTAGACATGGCCAAAAAGTTGCTATTTGTGGAGAAGTTGGATCAGGAAAATCAACCCTCTTAGCAACAATTCTAGGAGAAGTTCCGAATACAAAGGGAACAATTGATGTTCATGGGAAGTTTGCATATGTTTCTCAAACAGCGTGGATACAAACAGGTACAATACGGGAAAATATTTTGTTTGGATCCGAGTTCGATGATCAAAGATATCAAGAAACACTTCAAAAGTCTTCACTGATAAAGGACCTTGAGTTGCTTCCCTACGGTGACCTAACCGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAACAGCGAATTCAACTAGCCCGAGCTCTTTATGAAAATGCTGATTTATATCTCTTGGACGATCCATTCAGTGCCGTTGATGCACAAACTGCAAAAAGTTTGTTTAATGAATACATCATGGAAGGACTCAAAGAGAAAACTGTCTTACTTGTGACTCATCAAGTTGACTTTCTCCCAGCATTTGATACTGTTTTGTTAATGTCAGATGGTGTAATCCTAAAAGCTGGTCCGTATCACCGCCTAATGACCGAAAGCAAAGAATTCAAAGACCTTGTCAATGCTCACAAGGTTACTGCTGGATCAAACCAGTTTGTGAATGTTGCTTTTTCTCAAGATTCTAGAAATACTGCTAAAGCTTTAGTGAAAAAGCAGTGTGAAGAAACAAATGGAAATCAATTAATTAAGCAAGAAGAAAGAGAGATAGGAGACACAGGGTTCAAGCCTTACTTACAATATCTGAATAAAATGAAAGGCTATATTTTCTTCTCCGTGGCTACATTCTGTCACATTGTTTTTGTGGTTTCTCAGATACTACAAAACACGTGGATGGCTGCTAATGTCGACAATCTCCATGTCACCACATTGCAGTTGGTTTTAGTTTATTTCTGGATTGGACTTTCTTCAATATTTTTCATGGTGATCAGAAGTCTACTCGTAGTTTCATTGGGTCTTCATTCTTCAAAATACTTATTTTTACAATTGATGAACTCTCTCTTTCGAGCACCGATGTCTTTTTACGACTCTACGCCATTAGGAAGGATACTAAGTAGGGTCTCATCTGATCTGAGCATTATGGATCTTGACATGCCATTTAGCCTAATTTTTTCCGTCGGATCCGCTATAAACTTTTATGCTTGTCTTATAGTTTTATCAATTGTCACTTGGCAAGTGTTGATTGTGGTTATACCAATGGTATATGCTACAATTTGTTTACAGAGATACTACTTAGTCTCAGAAAAACAAATGATGCGGATGAATGGCACAACAAAATCCTATTTAGCCAATCATGTAGCTGAAACTGTTGCTGGCGCCATTACAATAAGGGCATTTGAGGAAGAAGATCGTTTTTTTAAGAAGAATCTTGATCTAATTGATATGAATGCTAGTACATTTTTCCACTGTTTTGCCTCAAATGAATGGTTGACGCAGCGACTAGAAACAATAAGCGCACTTGTTCTTTCCTCAGCAGCACTTTGCATGGTTATACTTCCACCAGGGACTTTTACCTCCGGATTTATCGGTCTGGCTCTAACTTATGGCCTTTCACTAAATGCTTCGTTAGTATTTTCAATTGGAATTCAATGCCGTCTCGCTGATAATATAATATCAGTAGAGAGGCTAAATCAATATATGCATATACAAAGTGAGGCAAAAGAAATAATAGAAGGTAATCATCCTCCTTTGAATTGGCCAGTTGCAGGCAAAGTCGAAATAAATGACTTGAAGATACGATATAGACCCGATGGACCACTTGTACTACATGGGATCACATGCACATTTGAAGCTGGCCACAAGATTGGTATTGTTGGAAGAACAGGCTGTGGAAAATCCACTCTTATTGGTGCTTTATTTCGTCTCGTGGAACCAGAAGGAGGAAAAGTTGTAGTTGACGGAATAGACATCTCAACTATTGGTCTTCATGATTTGAGGTTGCGTTTTGGGATTATACCTCAGGATCCTACCCTTTTTAATGGAACAGTGAGATTTAATATGGATCCTTTATCTCAACACACCGATCAAGAGATATGGGAGGTTCTCGGGAAATGCCAACTTCGAGAAGTTGTCCAAAAGAAAGAAGAGGGTTTAAACTCCTCAGTTGTTGACGATGGATCAAACTGGAGCATGGGACAAAGGCAATTATTCTGTTTAGGGCGCGCTCTTTTAAGGAGAAGTAGGATATTGGTACTGGATGAAGCAACTGCATCAATCGACAACTCAACTGATTTGATTCTACAGAAAACCATTAGAACCGAGTTTGCGGATTGTACAGTGATCACAGTAGCACACAGGATACCGAGTGTGATGGATTGTACTATGGTTCTCTCGATCAATGATGGAAAATTGGCGGAGTATGATGAACCGATGAGCTTGATGAAGAGAGAAGAATCGTTGTTCAGGAAGCTTGTCAACGAATACTGGTCTCATTTTCAGTCTGCAGAATCGCATTGA 4206 0.3861 MFRKFSSRPVCGLVRYSNLQLVSAITNGSLGLLHLCIGIWVLEETLRKNHKAFPLNLWLLELFHGLTWLFVTCAASLQIKQLSREWIWLFSILISFVSGVLCFLSISYAIGSRELSLKASLDIISFLGASLLLLCTYKTCKRDDARRDTFDSQLTPFAKAGFFSKMSFWWLNPLMKKGQEKTLPDEDIPKLRVSERAESCYLSFVEQSRKQRGKEPSSHSTIFWTIVSCHQREILITGLFALLKVLAISCGPLLLNAFILVSEGNESFKYEGYVLAISLFFIKIIESLAQRQWYFRSRVVGMKVRSLLTAKIYKKMLRLSNSARLIHSSGEIMNYMTVDAYRIGEFPYWFHRTWTTILQLSIALIILFRAIGLATLASLPVLVLTVFCNAPLSKLHHKFHCKLMGAQDARLKASSEALVNMKVLKLYAWETHFKNAIEKLRNVELKLLSAVLLRKTYVVFLFWTSPVMVSAASFLACYLLKIPLHASNVFTFVATLRLVQELITGIPDVIAVIIQANVSFARIGNFLETPELHSSNFNNRGIDDNLKGSVLIKSGDFSWEGNASKATLRSINLEVRHGQKVAICGEVGSGKSTLLATILGEVPNTKGTIDVHGKFAYVSQTAWIQTGTIRENILFGSEFDDQRYQETLQKSSLIKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYENADLYLLDDPFSAVDAQTAKSLFNEYIMEGLKEKTVLLVTHQVDFLPAFDTVLLMSDGVILKAGPYHRLMTESKEFKDLVNAHKVTAGSNQFVNVAFSQDSRNTAKALVKKQCEETNGNQLIKQEEREIGDTGFKPYLQYLNKMKGYIFFSVATFCHIVFVVSQILQNTWMAANVDNLHVTTLQLVLVYFWIGLSSIFFMVIRSLLVVSLGLHSSKYLFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDLDMPFSLIFSVGSAINFYACLIVLSIVTWQVLIVVIPMVYATICLQRYYLVSEKQMMRMNGTTKSYLANHVAETVAGAITIRAFEEEDRFFKKNLDLIDMNASTFFHCFASNEWLTQRLETISALVLSSAALCMVILPPGTFTSGFIGLALTYGLSLNASLVFSIGIQCRLADNIISVERLNQYMHIQSEAKEIIEGNHPPLNWPVAGKVEINDLKIRYRPDGPLVLHGITCTFEAGHKIGIVGRTGCGKSTLIGALFRLVEPEGGKVVVDGIDISTIGLHDLRLRFGIIPQDPTLFNGTVRFNMDPLSQHTDQEIWEVLGKCQLREVVQKKEEGLNSSVVDDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDLILQKTIRTEFADCTVITVAHRIPSVMDCTMVLSINDGKLAEYDEPMSLMKREESLFRKLVNEYWSHFQSAESH 1401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00967 1401 Pfam ABC transporter 1172 1320 IPR003439 GO:0005524
Trre11g00967 1401 CDD ABCC_MRP_domain2 1153 1373 - -
Trre11g00967 1401 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 552 773 IPR003439 GO:0005524
Trre11g00967 1401 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 235 515 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00967 1401 SUPERFAMILY ABC transporter transmembrane region 828 1135 IPR036640 GO:0005524|GO:0016020
Trre11g00967 1401 CDD ABC_6TM_ABCC_D1 236 523 IPR044746 GO:0140359
Trre11g00967 1401 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1155 1389 IPR003439 GO:0005524
Trre11g00967 1401 Pfam ABC transporter transmembrane region 235 494 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00967 1401 Pfam ABC transporter transmembrane region 843 1078 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00967 1401 FunFam ABC transporter C family member 5 539 781 - -
Trre11g00967 1401 Gene3D ABC transporter type 1, transmembrane domain 803 1137 IPR036640 GO:0005524|GO:0016020
Trre11g00967 1401 Gene3D ABC transporter type 1, transmembrane domain 205 529 IPR036640 GO:0005524|GO:0016020
Trre11g00967 1401 FunFam ABC transporter C family member 5 804 1136 - -
Trre11g00967 1401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 773 IPR027417 -
Trre11g00967 1401 Pfam ABC transporter 568 702 IPR003439 GO:0005524
Trre11g00967 1401 CDD ABCC_MRP_domain1 550 749 - -
Trre11g00967 1401 Gene3D - 530 797 IPR027417 -
Trre11g00967 1401 ProSitePatterns ABC transporters family signature. 675 689 IPR017871 GO:0005524|GO:0016887
Trre11g00967 1401 CDD ABC_6TM_ABCC_D2 841 1130 IPR044726 GO:0140359
Trre11g00967 1401 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 157 1389 - -
Trre11g00967 1401 FunFam ABC transporter C family member 3 1138 1390 - -
Trre11g00967 1401 SUPERFAMILY ABC transporter transmembrane region 223 528 IPR036640 GO:0005524|GO:0016020
Trre11g00967 1401 FunFam ABC transporter C family member 10 218 531 - -
Trre11g00967 1401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1144 1389 IPR027417 -
Trre11g00967 1401 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 851 1118 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00967 1401 Gene3D - 1139 1391 IPR027417 -
Trre11g00967 1401 SMART AAA_5 1181 1364 IPR003593 GO:0016887
Trre11g00967 1401 SMART AAA_5 577 750 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00967 Trre-Chr11 8677941 8683532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00967 544 795 Calmodulin-binding Proteins AT2G36910 30.515 1.65e-23 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00967 K05666 - gmx:100787314 2130.14