Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g00960 | ATGCAGCTAGTTTCTGCCATAACCAATGGATTTCTTGGGATATTGCATTTATCTTTAGGAATTTGGTTTTTAGAAGAGATTTTAAGGAAAAATCACAAAGCATTTCCTCTTCATTGGTGGTTGCTAGAACTCATTCATGGTTTCACTTGGTTGGTTGTAAGTTTAACTGTTAGTCTTCGGATAAAACAAATCGCAAAATCATCGATGTGGTTTTTTTCTATGCTTACATTCTTTGTTTCTGGTATATTATGTGTTTTATCTATATCTTATGCAATTGAAAGTAGAGAATTGTCACTCAAGGTAGCTTTGGATATTATATCATTTCTAGGAGCAATTTTGTTACTATTGTGCACATACAAATCATGTAAATGTAAAGATAGTGATAGAGAAATTGATGATAGTCTTTGTACTCCTTTGAATGGTGAGTTCGATGAAAATAATCTTCCGAGCCATGTTACTCCGTTTGCCGAGGCTGGATTCTTTAATAAGATTTGGTTTTGGTGGTTGAATCCGTTGATGAAAACAAGTCAGGAGAAAACACTTCAAGACGAGGATATTCCAAACTTGAGAGAGTCTGACCGAGCAGAAATTTGTTATGTTTCGTTTATCGAACAGTTAAACAGACAACGGCAATGTGAACTGTCATATCAGTCATCGGTTTTATGGACAATCGTTTCGTGCCACCGAAGAGAGATTTTGGTAACCGGATTCTTTGCTTTGCTTAAGGTACTCGCTATATCTTCAACTCCTTTACTTCTGAATGCGTTTATATTGGTTGCTGAGGGTAATGAAAGTTTCGAATATGAAGGTTATATATTGTCGGTATCACTCTTCCTTATAAAAATCATAGAATCACTATCACAAAGACAATGGTATTTCCGCTGTAGACTTGTTGGGATGAAAGTTAGATCACTACTTAATGCAGCGATTTATAAGAAAATATTAAGGCTATCCAATTCTGCGAGAATGATTCATTCTGGTGGCGAGATAATGAATTATATGATTGTGGATGCGTATAGAATTGGAGAATTTCCTTTCTGGTTTCACCAGACATGGACAACAATCCTCCAATTGTGTATTGCGTTAGTAATTCTTTTCCGCACAATTGGTTTAGCGACACTAGCATCATTGGCGGTGATAGTTCTTACTGTGATTTGCAATTATCCATTAGCAAAGTTACAGCATAAGTATCAGAGCAAACTTATGGTGGCACAAGATGAGAGATTAAAGGCTAGTTCTGAAGCTCTTGTGAATATGAAAGTGTTGAAGTTGTATGCATGGGAAAAACATTTTAAAAATGTCGTAGATTGCTTAAGAAATTCGGAACTAAAATTGTTATATGCAGTGCAATTAAGAAGAACTTACAATATCTTTCTCTTTTGGGCCTCGCCGATGTTGGTGTCTACTGCTTCTTTTCTAGCATGTTACTTGTTGAACGTTCCTTTGAATGCAAATAATGTTTTCACTTTCGTGGCAACTTTACGTCTTGTTCAAGAGCCAATTACAAGTATCCCGGATGTTATTGCGGTGGTCATTCAGGCAAAAGTTGCATTTGCTCGAATTGTTAGTTTCCTTGATGCACCAGAACTGCAGGGTGAAAAATCGAAGAACAGGTGCTTCGATGAAAACCTCAAAGGCTCAATTTCAATAAAATCTGCTAACTTTTCATGGGAAGGTAATGCATCAAAGGCAACACTAAGGAGCATAAATTTAGAGGTTCGACTCGGCCAAAAAGTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTAGCAACAATTCTCGGAGAAGTTCCTAAAACAAAGGGAAATATTGATGTTTGTGGGAGATTTGCATATGTTTCACAAACAGCGTGGATACAAACAGGTACAATACGGGACAATATTTTGTTCGGATCTGAATTGGATGATCAAAGATACCAAGAAACACTTCAAAGGTCTTCACTGGTAAAGGACTTTGAGTTGCTTCCCTACGGTGACCTCACTGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAACAGCGAATTCAACTTGCTCGAGCTCTTTATCAGAATGCTGATATATATCTATTAGATGATCCATTTAGTGCTGTCGATGCGCATACTGCAAAAAATTTGTTTAATGAATATATCATGGAAGGACTCAAAGGGAAAACAGTCTTACTTGTGACTCATCAAGTCGACTTCCTCCCAGCATTTGATTCGGTTTTGTTGATGTCAGACGGGGTAATCCTACAAGCTGGTCCATATAACGAGCTATTGACCTCAAGCAAAGAATTCAATGACCTTGTCAATGCTCACAAGGAGACTGCTGGTTCTAACCAGCAGCTTGTCGATGTTACTTCTTCTCAGCGATATTCATCTACTCGAAAAGTTATGCAAGATTTTGTGGAGAAACAGATTAAAGAAACAAACGGAAATCAATTAATTAAGCAAGAAGAAAGAGAGAAAGGAGATGCAGGGTTGAAGCCTTACTTACAATATTTGAATCAGATGAAAGGCTATATATTCTTCTTGATGGCTTCGCTTTGTCACCTTCTTTTTGTTATTTGTCAGATATTGCAAAACTCGTGGATGGCTGCTAATGTTGACAATCCGCTTGTCAGCACATTGAAATTGATTTTAGTTTATTTTCTTATCGGTGCTATTTCGACAGTTTTCTTGTTCACTAGAAGTCTACTTGTAGTTGCTTTAGGTCTTCAATCATCAAAATATTTATTTTCACAGTTGATGAACTCCCTCTTTCGTGCACCGATGTCATTTTATGACTCCACACCATTGGGAAGGATACTTAGTAGGGTCTCATCGGATATGAGCATTATGGATCTTGACATTCCATTTAGTCTCACTTTTGCTGTCGGAGGAACAATAGTTTTTTATTCTAGTCTTACAGTTTTAGCAGTTGTCACATGGCAAGTCTTGATTGTGGCTATACCAATGGTTTATGTTGCTATCCGCATGCAGAGATACTATTTTACCTTAGCAAAAGAAGTAATGCGGATAAATGGCACAACAAAATCATCACTAGCTAATCATGTAGCTGAAACTGTTGCGGGAGCTGCAACAATTAGGGCTTTTGAGGAGGAAGATCGTTCTTTTGAGAAGAACCTTGATTTAATCGATATTAATGCTAGTGCTTTTTTCCATAGTTTTGCCTCAAATGAGTGGTTGATCCAACGGTTAGAAACAATCAGTGCCGTTGTTCTTACCGCTGCAGCACTTTGCATGGTTATGCTCCCTCCTGGAACTTTCACCTCAGGAATTATTGGGATGGCACTATCTTATGGCCTTTCTTTAAACAATTCCTTAGTATTTTCAATTCAAAATCAATGCACTCTTGCAAATTACATAATATCAGTAGAGAGGTTAAATCAATATATGCATATAGAAAGTGAGGCCGAAGAAATAGTGGAAGAAAATCGTCCTCCTACGAATTGGCCAGATGCCGGCAAAGTAGAAATAAATGACTTGAAGATACGATACATATCCGATGGACCACTTGTACTTCATGGGATCACATGCACATTTAAAGCAGGACATAAGATTGGTATTGTTGGAAGAACAGGCAGTGGGAAATCCACTCTTATTAGCGCTTTATTTCGTCTTGTGGAACCAGCAGGAGGAAAAATTGTTGTCGATGGAATAGACATCTCATCTATCGGCCTTCATGATTTGAGGTCACGTTTCGGGGTTATACCTCAGGATCCTACCCTCTTTGACGGGACAGTAAGATATAATTTGGACCCTTTATCTCAACACACCGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCCAAGGAAAAGAAGAGGGTTTAAACTCCTCGGTTGTAGAAGATGGATCGAACTGGAGCATGGGACAAAGGCAGTTATTTTGTTTGGGGCGTGCGCTTTTGAGGAGAAGTAGGATATTGGTTTTGGACGAAGCAACTGCTTCAATTGATAATTCTACTGATCTGATTCTGCAAAAAATCATTAGGGCTGAGTTTGCAGATTGTACGGTGATCACAGTAGCACACAGGATACCGACTGTGATGGATTGCAGTATGGTTCTCGCTATAAGTGATGGAAAACTGGCGGAGTATGATGAGCCAATGAGCTTAATGAAGAGAGAAGAATCATTGTTCAGGAAACTTGTCAAGGAATATTGGTCTCATTTTCAGTCTGCAGAATCGCATTGA | 4212 | 0.3841 | MQLVSAITNGFLGILHLSLGIWFLEEILRKNHKAFPLHWWLLELIHGFTWLVVSLTVSLRIKQIAKSSMWFFSMLTFFVSGILCVLSISYAIESRELSLKVALDIISFLGAILLLLCTYKSCKCKDSDREIDDSLCTPLNGEFDENNLPSHVTPFAEAGFFNKIWFWWLNPLMKTSQEKTLQDEDIPNLRESDRAEICYVSFIEQLNRQRQCELSYQSSVLWTIVSCHRREILVTGFFALLKVLAISSTPLLLNAFILVAEGNESFEYEGYILSVSLFLIKIIESLSQRQWYFRCRLVGMKVRSLLNAAIYKKILRLSNSARMIHSGGEIMNYMIVDAYRIGEFPFWFHQTWTTILQLCIALVILFRTIGLATLASLAVIVLTVICNYPLAKLQHKYQSKLMVAQDERLKASSEALVNMKVLKLYAWEKHFKNVVDCLRNSELKLLYAVQLRRTYNIFLFWASPMLVSTASFLACYLLNVPLNANNVFTFVATLRLVQEPITSIPDVIAVVIQAKVAFARIVSFLDAPELQGEKSKNRCFDENLKGSISIKSANFSWEGNASKATLRSINLEVRLGQKVAICGEVGSGKSTLLATILGEVPKTKGNIDVCGRFAYVSQTAWIQTGTIRDNILFGSELDDQRYQETLQRSSLVKDFELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTAKNLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSVLLMSDGVILQAGPYNELLTSSKEFNDLVNAHKETAGSNQQLVDVTSSQRYSSTRKVMQDFVEKQIKETNGNQLIKQEEREKGDAGLKPYLQYLNQMKGYIFFLMASLCHLLFVICQILQNSWMAANVDNPLVSTLKLILVYFLIGAISTVFLFTRSLLVVALGLQSSKYLFSQLMNSLFRAPMSFYDSTPLGRILSRVSSDMSIMDLDIPFSLTFAVGGTIVFYSSLTVLAVVTWQVLIVAIPMVYVAIRMQRYYFTLAKEVMRINGTTKSSLANHVAETVAGAATIRAFEEEDRSFEKNLDLIDINASAFFHSFASNEWLIQRLETISAVVLTAAALCMVMLPPGTFTSGIIGMALSYGLSLNNSLVFSIQNQCTLANYIISVERLNQYMHIESEAEEIVEENRPPTNWPDAGKVEINDLKIRYISDGPLVLHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFDGTVRYNLDPLSQHTDQEIWEVLGKCQLREVVQGKEEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDLILQKIIRAEFADCTVITVAHRIPTVMDCSMVLAISDGKLAEYDEPMSLMKREESLFRKLVKEYWSHFQSAESH | 1403 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g00960 | 1403 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1157 | 1391 | IPR003439 | GO:0005524 | |
Trre11g00960 | 1403 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1147 | 1390 | IPR027417 | - | |
Trre11g00960 | 1403 | Gene3D | ABC transporter type 1, transmembrane domain | 220 | 522 | IPR036640 | GO:0005524|GO:0016020 | |
Trre11g00960 | 1403 | FunFam | ABC transporter C family member 10 | 530 | 784 | - | - | |
Trre11g00960 | 1403 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 540 | 771 | IPR027417 | - | |
Trre11g00960 | 1403 | SMART | AAA_5 | 1183 | 1375 | IPR003593 | GO:0016887 | |
Trre11g00960 | 1403 | SMART | AAA_5 | 575 | 748 | IPR003593 | GO:0016887 | |
Trre11g00960 | 1403 | Gene3D | ABC transporter type 1, transmembrane domain | 804 | 1139 | IPR036640 | GO:0005524|GO:0016020 | |
Trre11g00960 | 1403 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 550 | 771 | IPR003439 | GO:0005524 | |
Trre11g00960 | 1403 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 844 | 1120 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre11g00960 | 1403 | FunFam | ABC transporter C family member 10 | 216 | 529 | - | - | |
Trre11g00960 | 1403 | Gene3D | - | 523 | 796 | IPR027417 | - | |
Trre11g00960 | 1403 | FunFam | ABC transporter C family member 3 | 1140 | 1392 | - | - | |
Trre11g00960 | 1403 | ProSitePatterns | ABC transporters family signature. | 673 | 687 | IPR017871 | GO:0005524|GO:0016887 | |
Trre11g00960 | 1403 | SUPERFAMILY | ABC transporter transmembrane region | 221 | 528 | IPR036640 | GO:0005524|GO:0016020 | |
Trre11g00960 | 1403 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 233 | 513 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre11g00960 | 1403 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 156 | 1391 | - | - | |
Trre11g00960 | 1403 | CDD | ABC_6TM_ABCC_D2 | 839 | 1132 | IPR044726 | GO:0140359 | |
Trre11g00960 | 1403 | CDD | ABCC_MRP_domain1 | 548 | 747 | - | - | |
Trre11g00960 | 1403 | SUPERFAMILY | ABC transporter transmembrane region | 830 | 1137 | IPR036640 | GO:0005524|GO:0016020 | |
Trre11g00960 | 1403 | Pfam | ABC transporter transmembrane region | 842 | 1101 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre11g00960 | 1403 | Pfam | ABC transporter transmembrane region | 233 | 498 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre11g00960 | 1403 | Pfam | ABC transporter | 1174 | 1322 | IPR003439 | GO:0005524 | |
Trre11g00960 | 1403 | CDD | ABCC_MRP_domain2 | 1155 | 1375 | - | - | |
Trre11g00960 | 1403 | Pfam | ABC transporter | 566 | 700 | IPR003439 | GO:0005524 | |
Trre11g00960 | 1403 | CDD | ABC_6TM_ABCC_D1 | 234 | 521 | IPR044746 | GO:0140359 | |
Trre11g00960 | 1403 | FunFam | ABC transporter C family member 5 | 806 | 1138 | - | - | |
Trre11g00960 | 1403 | Gene3D | - | 1140 | 1392 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g00960 | Trre-Chr11 | 8409751 | 8414973 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g00960 | 499 | 800 | Calmodulin-binding Proteins | AT2G36910 | 27.414 | 3.01e-26 | 115 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g00960 | K05666 | - | gmx:100787314 | 2199.86 |