Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00960 ATGCAGCTAGTTTCTGCCATAACCAATGGATTTCTTGGGATATTGCATTTATCTTTAGGAATTTGGTTTTTAGAAGAGATTTTAAGGAAAAATCACAAAGCATTTCCTCTTCATTGGTGGTTGCTAGAACTCATTCATGGTTTCACTTGGTTGGTTGTAAGTTTAACTGTTAGTCTTCGGATAAAACAAATCGCAAAATCATCGATGTGGTTTTTTTCTATGCTTACATTCTTTGTTTCTGGTATATTATGTGTTTTATCTATATCTTATGCAATTGAAAGTAGAGAATTGTCACTCAAGGTAGCTTTGGATATTATATCATTTCTAGGAGCAATTTTGTTACTATTGTGCACATACAAATCATGTAAATGTAAAGATAGTGATAGAGAAATTGATGATAGTCTTTGTACTCCTTTGAATGGTGAGTTCGATGAAAATAATCTTCCGAGCCATGTTACTCCGTTTGCCGAGGCTGGATTCTTTAATAAGATTTGGTTTTGGTGGTTGAATCCGTTGATGAAAACAAGTCAGGAGAAAACACTTCAAGACGAGGATATTCCAAACTTGAGAGAGTCTGACCGAGCAGAAATTTGTTATGTTTCGTTTATCGAACAGTTAAACAGACAACGGCAATGTGAACTGTCATATCAGTCATCGGTTTTATGGACAATCGTTTCGTGCCACCGAAGAGAGATTTTGGTAACCGGATTCTTTGCTTTGCTTAAGGTACTCGCTATATCTTCAACTCCTTTACTTCTGAATGCGTTTATATTGGTTGCTGAGGGTAATGAAAGTTTCGAATATGAAGGTTATATATTGTCGGTATCACTCTTCCTTATAAAAATCATAGAATCACTATCACAAAGACAATGGTATTTCCGCTGTAGACTTGTTGGGATGAAAGTTAGATCACTACTTAATGCAGCGATTTATAAGAAAATATTAAGGCTATCCAATTCTGCGAGAATGATTCATTCTGGTGGCGAGATAATGAATTATATGATTGTGGATGCGTATAGAATTGGAGAATTTCCTTTCTGGTTTCACCAGACATGGACAACAATCCTCCAATTGTGTATTGCGTTAGTAATTCTTTTCCGCACAATTGGTTTAGCGACACTAGCATCATTGGCGGTGATAGTTCTTACTGTGATTTGCAATTATCCATTAGCAAAGTTACAGCATAAGTATCAGAGCAAACTTATGGTGGCACAAGATGAGAGATTAAAGGCTAGTTCTGAAGCTCTTGTGAATATGAAAGTGTTGAAGTTGTATGCATGGGAAAAACATTTTAAAAATGTCGTAGATTGCTTAAGAAATTCGGAACTAAAATTGTTATATGCAGTGCAATTAAGAAGAACTTACAATATCTTTCTCTTTTGGGCCTCGCCGATGTTGGTGTCTACTGCTTCTTTTCTAGCATGTTACTTGTTGAACGTTCCTTTGAATGCAAATAATGTTTTCACTTTCGTGGCAACTTTACGTCTTGTTCAAGAGCCAATTACAAGTATCCCGGATGTTATTGCGGTGGTCATTCAGGCAAAAGTTGCATTTGCTCGAATTGTTAGTTTCCTTGATGCACCAGAACTGCAGGGTGAAAAATCGAAGAACAGGTGCTTCGATGAAAACCTCAAAGGCTCAATTTCAATAAAATCTGCTAACTTTTCATGGGAAGGTAATGCATCAAAGGCAACACTAAGGAGCATAAATTTAGAGGTTCGACTCGGCCAAAAAGTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTAGCAACAATTCTCGGAGAAGTTCCTAAAACAAAGGGAAATATTGATGTTTGTGGGAGATTTGCATATGTTTCACAAACAGCGTGGATACAAACAGGTACAATACGGGACAATATTTTGTTCGGATCTGAATTGGATGATCAAAGATACCAAGAAACACTTCAAAGGTCTTCACTGGTAAAGGACTTTGAGTTGCTTCCCTACGGTGACCTCACTGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAACAGCGAATTCAACTTGCTCGAGCTCTTTATCAGAATGCTGATATATATCTATTAGATGATCCATTTAGTGCTGTCGATGCGCATACTGCAAAAAATTTGTTTAATGAATATATCATGGAAGGACTCAAAGGGAAAACAGTCTTACTTGTGACTCATCAAGTCGACTTCCTCCCAGCATTTGATTCGGTTTTGTTGATGTCAGACGGGGTAATCCTACAAGCTGGTCCATATAACGAGCTATTGACCTCAAGCAAAGAATTCAATGACCTTGTCAATGCTCACAAGGAGACTGCTGGTTCTAACCAGCAGCTTGTCGATGTTACTTCTTCTCAGCGATATTCATCTACTCGAAAAGTTATGCAAGATTTTGTGGAGAAACAGATTAAAGAAACAAACGGAAATCAATTAATTAAGCAAGAAGAAAGAGAGAAAGGAGATGCAGGGTTGAAGCCTTACTTACAATATTTGAATCAGATGAAAGGCTATATATTCTTCTTGATGGCTTCGCTTTGTCACCTTCTTTTTGTTATTTGTCAGATATTGCAAAACTCGTGGATGGCTGCTAATGTTGACAATCCGCTTGTCAGCACATTGAAATTGATTTTAGTTTATTTTCTTATCGGTGCTATTTCGACAGTTTTCTTGTTCACTAGAAGTCTACTTGTAGTTGCTTTAGGTCTTCAATCATCAAAATATTTATTTTCACAGTTGATGAACTCCCTCTTTCGTGCACCGATGTCATTTTATGACTCCACACCATTGGGAAGGATACTTAGTAGGGTCTCATCGGATATGAGCATTATGGATCTTGACATTCCATTTAGTCTCACTTTTGCTGTCGGAGGAACAATAGTTTTTTATTCTAGTCTTACAGTTTTAGCAGTTGTCACATGGCAAGTCTTGATTGTGGCTATACCAATGGTTTATGTTGCTATCCGCATGCAGAGATACTATTTTACCTTAGCAAAAGAAGTAATGCGGATAAATGGCACAACAAAATCATCACTAGCTAATCATGTAGCTGAAACTGTTGCGGGAGCTGCAACAATTAGGGCTTTTGAGGAGGAAGATCGTTCTTTTGAGAAGAACCTTGATTTAATCGATATTAATGCTAGTGCTTTTTTCCATAGTTTTGCCTCAAATGAGTGGTTGATCCAACGGTTAGAAACAATCAGTGCCGTTGTTCTTACCGCTGCAGCACTTTGCATGGTTATGCTCCCTCCTGGAACTTTCACCTCAGGAATTATTGGGATGGCACTATCTTATGGCCTTTCTTTAAACAATTCCTTAGTATTTTCAATTCAAAATCAATGCACTCTTGCAAATTACATAATATCAGTAGAGAGGTTAAATCAATATATGCATATAGAAAGTGAGGCCGAAGAAATAGTGGAAGAAAATCGTCCTCCTACGAATTGGCCAGATGCCGGCAAAGTAGAAATAAATGACTTGAAGATACGATACATATCCGATGGACCACTTGTACTTCATGGGATCACATGCACATTTAAAGCAGGACATAAGATTGGTATTGTTGGAAGAACAGGCAGTGGGAAATCCACTCTTATTAGCGCTTTATTTCGTCTTGTGGAACCAGCAGGAGGAAAAATTGTTGTCGATGGAATAGACATCTCATCTATCGGCCTTCATGATTTGAGGTCACGTTTCGGGGTTATACCTCAGGATCCTACCCTCTTTGACGGGACAGTAAGATATAATTTGGACCCTTTATCTCAACACACCGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCCAAGGAAAAGAAGAGGGTTTAAACTCCTCGGTTGTAGAAGATGGATCGAACTGGAGCATGGGACAAAGGCAGTTATTTTGTTTGGGGCGTGCGCTTTTGAGGAGAAGTAGGATATTGGTTTTGGACGAAGCAACTGCTTCAATTGATAATTCTACTGATCTGATTCTGCAAAAAATCATTAGGGCTGAGTTTGCAGATTGTACGGTGATCACAGTAGCACACAGGATACCGACTGTGATGGATTGCAGTATGGTTCTCGCTATAAGTGATGGAAAACTGGCGGAGTATGATGAGCCAATGAGCTTAATGAAGAGAGAAGAATCATTGTTCAGGAAACTTGTCAAGGAATATTGGTCTCATTTTCAGTCTGCAGAATCGCATTGA 4212 0.3841 MQLVSAITNGFLGILHLSLGIWFLEEILRKNHKAFPLHWWLLELIHGFTWLVVSLTVSLRIKQIAKSSMWFFSMLTFFVSGILCVLSISYAIESRELSLKVALDIISFLGAILLLLCTYKSCKCKDSDREIDDSLCTPLNGEFDENNLPSHVTPFAEAGFFNKIWFWWLNPLMKTSQEKTLQDEDIPNLRESDRAEICYVSFIEQLNRQRQCELSYQSSVLWTIVSCHRREILVTGFFALLKVLAISSTPLLLNAFILVAEGNESFEYEGYILSVSLFLIKIIESLSQRQWYFRCRLVGMKVRSLLNAAIYKKILRLSNSARMIHSGGEIMNYMIVDAYRIGEFPFWFHQTWTTILQLCIALVILFRTIGLATLASLAVIVLTVICNYPLAKLQHKYQSKLMVAQDERLKASSEALVNMKVLKLYAWEKHFKNVVDCLRNSELKLLYAVQLRRTYNIFLFWASPMLVSTASFLACYLLNVPLNANNVFTFVATLRLVQEPITSIPDVIAVVIQAKVAFARIVSFLDAPELQGEKSKNRCFDENLKGSISIKSANFSWEGNASKATLRSINLEVRLGQKVAICGEVGSGKSTLLATILGEVPKTKGNIDVCGRFAYVSQTAWIQTGTIRDNILFGSELDDQRYQETLQRSSLVKDFELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTAKNLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSVLLMSDGVILQAGPYNELLTSSKEFNDLVNAHKETAGSNQQLVDVTSSQRYSSTRKVMQDFVEKQIKETNGNQLIKQEEREKGDAGLKPYLQYLNQMKGYIFFLMASLCHLLFVICQILQNSWMAANVDNPLVSTLKLILVYFLIGAISTVFLFTRSLLVVALGLQSSKYLFSQLMNSLFRAPMSFYDSTPLGRILSRVSSDMSIMDLDIPFSLTFAVGGTIVFYSSLTVLAVVTWQVLIVAIPMVYVAIRMQRYYFTLAKEVMRINGTTKSSLANHVAETVAGAATIRAFEEEDRSFEKNLDLIDINASAFFHSFASNEWLIQRLETISAVVLTAAALCMVMLPPGTFTSGIIGMALSYGLSLNNSLVFSIQNQCTLANYIISVERLNQYMHIESEAEEIVEENRPPTNWPDAGKVEINDLKIRYISDGPLVLHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFDGTVRYNLDPLSQHTDQEIWEVLGKCQLREVVQGKEEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDLILQKIIRAEFADCTVITVAHRIPTVMDCSMVLAISDGKLAEYDEPMSLMKREESLFRKLVKEYWSHFQSAESH 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00960 1403 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1157 1391 IPR003439 GO:0005524
Trre11g00960 1403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1147 1390 IPR027417 -
Trre11g00960 1403 Gene3D ABC transporter type 1, transmembrane domain 220 522 IPR036640 GO:0005524|GO:0016020
Trre11g00960 1403 FunFam ABC transporter C family member 10 530 784 - -
Trre11g00960 1403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 540 771 IPR027417 -
Trre11g00960 1403 SMART AAA_5 1183 1375 IPR003593 GO:0016887
Trre11g00960 1403 SMART AAA_5 575 748 IPR003593 GO:0016887
Trre11g00960 1403 Gene3D ABC transporter type 1, transmembrane domain 804 1139 IPR036640 GO:0005524|GO:0016020
Trre11g00960 1403 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 550 771 IPR003439 GO:0005524
Trre11g00960 1403 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 844 1120 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00960 1403 FunFam ABC transporter C family member 10 216 529 - -
Trre11g00960 1403 Gene3D - 523 796 IPR027417 -
Trre11g00960 1403 FunFam ABC transporter C family member 3 1140 1392 - -
Trre11g00960 1403 ProSitePatterns ABC transporters family signature. 673 687 IPR017871 GO:0005524|GO:0016887
Trre11g00960 1403 SUPERFAMILY ABC transporter transmembrane region 221 528 IPR036640 GO:0005524|GO:0016020
Trre11g00960 1403 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 233 513 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00960 1403 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 156 1391 - -
Trre11g00960 1403 CDD ABC_6TM_ABCC_D2 839 1132 IPR044726 GO:0140359
Trre11g00960 1403 CDD ABCC_MRP_domain1 548 747 - -
Trre11g00960 1403 SUPERFAMILY ABC transporter transmembrane region 830 1137 IPR036640 GO:0005524|GO:0016020
Trre11g00960 1403 Pfam ABC transporter transmembrane region 842 1101 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00960 1403 Pfam ABC transporter transmembrane region 233 498 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g00960 1403 Pfam ABC transporter 1174 1322 IPR003439 GO:0005524
Trre11g00960 1403 CDD ABCC_MRP_domain2 1155 1375 - -
Trre11g00960 1403 Pfam ABC transporter 566 700 IPR003439 GO:0005524
Trre11g00960 1403 CDD ABC_6TM_ABCC_D1 234 521 IPR044746 GO:0140359
Trre11g00960 1403 FunFam ABC transporter C family member 5 806 1138 - -
Trre11g00960 1403 Gene3D - 1140 1392 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00960 Trre-Chr11 8409751 8414973 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00960 499 800 Calmodulin-binding Proteins AT2G36910 27.414 3.01e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00960 K05666 - gmx:100787314 2199.86