Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00940 ATGTCTGAAAAAGGTAAGAATGTGGCAATAGGAATCGATCTAGGAACAACATATTCATGTGTTGCAGTGTGGAGGAATGATAAGGTAGAAATCATAGTGAACGACCAAGGAAATAGAACAACACCTTCTTATGTTGCCTTCACTGACTCTCAAAGGATGATTGGTGATGCTGCTTTCAATATGGCTGCTTGCAAACCAACCAACACTGTCTATGATGCAAAGAGGCTAATTGGTAGAAAATTTTCTGACACCATCGTTCAAAGTGATATGAAATTATGGCCATTTAAAATAATTGGCGGCCTCGATGAGAAACCCATGATTGTTGTCAATTACAACGACGAAGAAAAACAATTTTCTTCCGAGGAAATATCATCGATGGTATTGGCAAAAATGCGTGACATTGCAGAAGCTTACCTTGGATCAACAGTGAAGGATGTTGTTATAACGGTTCCTGCTTACTTCAACAACTCGCAACGCGAAGCTACTAAAGACGCAGGTGTTATTGCAGGCCTCAATGTTATGCGAATAATCAACGAGCCTACTGCAGCTGCAATTGCATATGGCCTTGACATGAAACCATTTAATCATGAACAAAGGCATGTTTTCATTTTTGATTTAGGTGGTGGAACTTTGGATGTGTCCATCGTCACATTTGACAAGGATGACATCAAAGTTAAGGCTCATTCCGGAGACACTCACCTCGGTGGACAGGATTTTGATAATACAATGGTGAACCATTTCGTGAAGGAGTTCTCGAGGAAGAATAAAATCGACATTAGTAGAGACCCAAGAGCTCTTAGGAGGTTGAAGACTGCTTGTGAGAAAGCAAAGAGGATACTTTCTTCCAATACCGACACAACCATTGAGATAGAATGTTTAAATCAAGGTATAGATTTCTACGCACCAATTAGTCGCGCAAAGTTTGAGGAACTCAACAAGAATTATTTCATCAAGTGCATGGAGATTGTCGAACAATGTCTAATAGATAGCGGCGTGGAGAAGAGTAGCATTGACGATGTTGTCCTTGTTGGTGGCTCTACAAGGATCGTAAAATTGCAACAACTATTGAGTGATATCTTTGACGGAAAGGAATTATGCAAAAGAATCAATGCCGATGAGGCGGTTGCATATGGTGCCGCTATCAAAGCATCTATATTGAGTGGTGAAAGTAGTGAAAAGGTTCAAGATTTGAAAGAAGTCATTCCTTTGTCCCTTGGATTAGAAACACATGGTGGGATCATGAGAGTAATTATTCCTAGGAATACCATAATTCCTACAAACAAGGAACATGTGTTCCTCAAATCGAAATCAGCTTCCAAATTGATGATGATGGTATCTTACATGTCTCTACCTCGGAAAAATTCTCCGGAGTTAACAAGACAGTTAAAATAA 1392 0.3966 MSEKGKNVAIGIDLGTTYSCVAVWRNDKVEIIVNDQGNRTTPSYVAFTDSQRMIGDAAFNMAACKPTNTVYDAKRLIGRKFSDTIVQSDMKLWPFKIIGGLDEKPMIVVNYNDEEKQFSSEEISSMVLAKMRDIAEAYLGSTVKDVVITVPAYFNNSQREATKDAGVIAGLNVMRIINEPTAAAIAYGLDMKPFNHEQRHVFIFDLGGGTLDVSIVTFDKDDIKVKAHSGDTHLGGQDFDNTMVNHFVKEFSRKNKIDISRDPRALRRLKTACEKAKRILSSNTDTTIEIECLNQGIDFYAPISRAKFEELNKNYFIKCMEIVEQCLIDSGVEKSSIDDVVLVGGSTRIVKLQQLLSDIFDGKELCKRINADEAVAYGAAIKASILSGESSEKVQDLKEVIPLSLGLETHGGIMRVIIPRNTIIPTNKEHVFLKSKSASKLMMMVSYMSLPRKNSPELTRQLK 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00940 463 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 384 443 IPR029047 -
Trre11g00940 463 Gene3D - 71 126 - -
Trre11g00940 463 PRINTS 70kDa heat shock protein signature 36 48 - -
Trre11g00940 463 PRINTS 70kDa heat shock protein signature 394 413 - -
Trre11g00940 463 PRINTS 70kDa heat shock protein signature 337 353 - -
Trre11g00940 463 PRINTS 70kDa heat shock protein signature 369 389 - -
Trre11g00940 463 PRINTS 70kDa heat shock protein signature 209 219 - -
Trre11g00940 463 PRINTS 70kDa heat shock protein signature 8 21 - -
Trre11g00940 463 PRINTS 70kDa heat shock protein signature 146 166 - -
Trre11g00940 463 FunFam Heat shock protein 70 10 200 - -
Trre11g00940 463 Gene3D - 192 366 - -
Trre11g00940 463 FunFam Heat shock 70 kDa 235 318 - -
Trre11g00940 463 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Trre11g00940 463 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 397 436 IPR029047 -
Trre11g00940 463 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Trre11g00940 463 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Trre11g00940 463 PANTHER HEAT SHOCK PROTEIN 70KDA 9 433 IPR013126 GO:0005524|GO:0140662
Trre11g00940 463 Gene3D Actin; Chain A, domain 4 235 318 - -
Trre11g00940 463 Pfam Hsp70 protein 9 436 IPR013126 GO:0005524|GO:0140662
Trre11g00940 463 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Trre11g00940 463 Gene3D - 10 383 - -
Trre11g00940 463 FunFam heat shock 70 kDa protein-like 71 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00940 Trre-Chr11 7990869 7993335 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00940 1 432 Calmodulin-binding Proteins AT3G09440 71.659 0.0 643