Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00900 ATGTCGCTGGAACCGTTGGATCGAAAGAGCTCGTTTAGGGAGAGGAAGCGCCACGAGAGTTCTGAGTCTTTTGGGTCTGTGGCTAGATGGAGAGGATCTACTTCTTATAACCGGTCGCGTGAGTTCAATCGTGGTGGCGATTATCGAAGACTAGGAGGTCATCGTAAGCAGGGTAGCTGGCAGCTATTTCCAGAAGAATCTGGTCAACGGCACATGATTTCTCGATCTTGTGACAGGAGGCTGGAGGAAGATAACTATCGCCCGTCATTTTCTCGAGGGGATGGAAAGTATGGAAGGGGCAATAAGGAAAGTAGAGGAGCCTTTAGCCAGAGAGAATGGAGAGGGCGTTCATCAGAAACCACAAACAACTCTCTGAATATGTCCAGGAGGCAAACCAATGCAAGTAATGATCGCAAGTCAGTTGATGATATGCTAACATATTCCTCTCATTCACATTCTGACTTAGTAAATACTTGGGAGCAGCATAACATGAAAGACCAGCATGATAAGATCGGTGGTGTTAATCGGTTTGTTACAGACCAGAGAAATGATAGGGATAGTTCATTGGGTACAATTGACTGGAAGCCCCTTAAATGGACCCGGCCTGGATGCTCCTCTTCACGAGACTCAGGCTTTAGCCGCTCAAGTGGCATGAGGAGCTTAGGAGGGACAAATTCGATGGGAAGCTGTGAATGGAAGGTTGGGTTGCAACAAAAATTTGCCACTGCTGTTGAGTCAAATTCAGGGGAAGCTGCTACATGTCGTGCATTATCTGCTCCATCCGAAGAGGAAAATTCGAGGAAGAAGCCTAGGCTAAAATGGGGTGAGGGACTTGCAAAGTTTGAGAGAAAGCAAGTTGACGGGCCTGAGGTAACTTCAAACAATGATGACCCTGTCTCACCTCCTTTCAATATGGAACCCAATAATTTCCTCAGTACTGGCTTAGTAGATAGAAGCCCTAAAGTTTCAGGACTCCCAGGGTGTGCATCTCCTGCAACTCCATCTTCGGCTGCCCGCAGCTCTTCACCAGGTGCAGATGATAAATTGTTTGAAAAAGCTGCAAATGTGGACAATGATGTTGGTAACTTGAGTAGTTCACCTGGTCCTGGGTCTCAAAGTCATCTGCAGATACTTTCTTTCGATTTAGAGAAGGTGGATATTGACTCATTGATTAGTTTGGGCTCTTCACTTGTCGAGTTGTTACCACAGTCTGATAATCTAAGCTCTGTGGATTATAGTTTATTAATTTCCACCACAATGAATAAGCTGCTGATATTGAAAGCGGACATTTCAAAGGTATTAGAGGTCACTGAAACTGAAATTGATTTACTTGAAAATGAACTTAGATCTCTAAAATCTGAATCTAAGGATAGATTTCAATGTTCAGAAGCAGTTGGCTCTCTGCTAATTCCATGTGCTTATAGGCATGTTGCCAATGTCTCGGCTTGTGGTGATAGTAATTCATCTTTGGAGGTTAAAGATGGTGTGGATGCTAAGTCTAGTGCGAGCACTGGGGATATTTTATGCGATACAATTATTTCTTGCAATGAAAAAACTGCAAAAGCAGCATGTGAAGTGTTTGATAAATTATTGCCTGAAAAATGTTGCAAGAACGAGAATATTGGAGCTAGCAGTGGTTCATGCTCTCATAATGGCACACTCATTAAGGAAAAATTTGCCGAGAGAAGGCGATTGGCAAGATTGAAGGAGAAAATTATAACACTCAAGTTTAAAGCCTTGCATCACTTGTGGAAAGAAGACATGCGTTTAGTGTCTATTAGGAAACACCGCCCAAAATCTCACAAGAAACTTGAATCAGAGCTACGCACCACCAGTAATAGTCATCAGAAGAAGCGGTCTTCTATTCCTTTCCGTTTTCCCTTCCCTGGAAACCAACTGAAATTGGTTCCAACATCTGAGATGATCAAGTATACAAGCCAACTGCTTTCAGAATCCAAACATGAAATTCACAGAAGCACCTTGAAGATGCCAGCATTAATTTTGGATCAAAAGGACAAAATGTATACAATGTTTTTATCTAGCAATGGGCTGGTTGAAGATCCAGTGGCTATTGAGAAAGAAAGGGTCATGATAAACCCTTGGACTGCAGAAGAGAAAGAGATTTTCTTGGAGAAATTTGCTGCCTATGGAAAAGATTTTCGGAAGATTGCTACTTTCCTTGACCACAAGACAACGGCTGACTGCGTTGAATTCTACTACAAAAATCACAAGTCTGATTGTTTTGAGAAAATTAAGAAAAAAGATGATGACAAGCTAGGGAAATTTTTCAAAGCCAAAACTGACTTGATAGCATCAGGTGTAAAATGTAACTCTGAAGTGAATGCTTCTTCACTTGATATTTTGAGTGAAGCTTCTTCAGTGATGGCAGATGACATTGCACGTGATCGTAAAATGCGTTCAGGAAGTTCCTTATGGAGGGGATATAATAGTAAGGCCATGTCAAGGTGTGACAATATCATTACAGAGAGGTCGAACAGTTTTGACATTCTTCAAGATGAAAGAGAGACTGTTGCAGCTGATGTATTGGCTAGTATATGTGGTTGTCTTTTATCTGAGGCAACGAGTTCCTGCATAACTAGTTCAGTTGATCCCGTGAAAGGTAAAAGGGTCGTCAAGAAGTGCGTGAAAGCGAAGCCTCTATCCAAAAAACCTCCGATGCCAGACATTACTCAAAATATTGATCATGAAACTTGTTCCGACGAGAGCTGTGGTGAAATGGAACTTACTGATTGGTCAGATGTAGAGAAGGCAGCCTTTCTTCATGCTGTATCATTGTTTGGTAAGGATTTTGCAATGATTGCACAGCGTGTCAGAACAAGATCCCAATACCAGTGCAAAGTGTTTTTTAGCAAGACTCAGAAACGTCTTAGATTGAATCGCATGGGTCAGCGATCTGAAAATGTTGGATCACTGGTGAATGATGGTGTGGATGGTGCCAGGAGTGATGCAGATAATGCATGCGTTGTAGAGACAGGTTCAGCCAATGGCTCTGATTCGTCAGGCACTAAAACAGGTGTGGACCAGCCTGCATCTGATAAGAACATGTATCATGATGAATCCAATCCCGTAGAAGCTAGCAACCTGTCAGCTGACTTGTATACATCCGAGGAAATTAATAGGAAGGTAGATCATGAAGATGTAAATATGGTTTCTAATGCATGTGTGATTGGTAGCGAGTTTAAACTGTGCACTGACGGTAATGTAGGTGTCTTGAATGGTTCTGATAGGTCTGATTCTGTCCGGGAGCAGAGAGCTATAGTTATGTCAGATAGCATAGAAATTGGAAAAAGTGAACCCAGTGGAGGTGCAGTTACAGAATTGGTGTCTGGTACGGGGACAATGGAACCATGCTGCTCTAATTCTGTTGCTGAGGTTAGACTAGTCTCTGGCGTTTCTTCTGCACAATGTGGAGATGAATTGGAGGGTTCAACTACATGTCTAGTTGATGGAGATGAAGCTGATACAGATGTTGTAATTGAATTGAAAGGCAATGTCCACGATTCAAGCACTTTGGTGAATACTTCACTATCATCTGTGGATGTTTCTTGTCAAAGATTGAGTGTTGAAGCTGAAAATGAGCCCCAACTATGCCTTGAAAAACCTCAATTCTCAGGATCATCAGAGGGCCCACTCTCAAATGCAACATCAGCATTGCAATATTCTGGTGCTGCTGTGCAATACAAGAAAACATCTAGCCAAGATCTACCGTCTTGTGATTTTCAGGGAAACCAAGATATGACTCGACACAATTGCAGTAGCAATCTTGGCCATCAGCCTTGTACTTCTGAGAATTCACTGGACCATGTTGAGGCTGCTAGAGTCCTTCAATGCTATAATCTGCAAGCACCTTCTGAGAAGGAAGTGAATGTGAATATGAGCTGCAGCAGTTCAGCAACTGAATTGCCACTTTTGTCCCAGAAGATTGATTTAGAAGAATCACCCAGAAATGATGTGAAAATATTCGGAAAGATACTCACCAATCCTTCATCCACCCTAGGTGCAAAGGAAAATGAAGAAAATGGTACCCATCATCCGAAGTTAAGTAGTGGCTCTTCTAGTCTGAAATTAACCGGCCATGATAATACTGGTGGAAAATCAACTATTTTGAATGTTGATCTTAATGATTGCCGGGTCTTTGAAAATGTTCCTGTTGGGAACAAAATGCAGCCTGTTTTCTCATCACTCCCTGATTCTGCCATTTTGCTTGCCAAGTATCCTGCTGCATTTGGTAGTTATGGTCTTGAAGCAGTCTCAACTTTACAGCAGCAAGTTACAAAATTGGTAACATCAAATGGTATTGGTGAACCAGGGATTCTTGCAGGTGGATCCACCACCATTGCTGACCAGTTTGTTGGTCAAACTGGGAGTGCAATAAAAGAAGATGAACCTGTGGGAGAGAAAAAGGATTTGAATAGTTAG 4440 0.4221 MSLEPLDRKSSFRERKRHESSESFGSVARWRGSTSYNRSREFNRGGDYRRLGGHRKQGSWQLFPEESGQRHMISRSCDRRLEEDNYRPSFSRGDGKYGRGNKESRGAFSQREWRGRSSETTNNSLNMSRRQTNASNDRKSVDDMLTYSSHSHSDLVNTWEQHNMKDQHDKIGGVNRFVTDQRNDRDSSLGTIDWKPLKWTRPGCSSSRDSGFSRSSGMRSLGGTNSMGSCEWKVGLQQKFATAVESNSGEAATCRALSAPSEEENSRKKPRLKWGEGLAKFERKQVDGPEVTSNNDDPVSPPFNMEPNNFLSTGLVDRSPKVSGLPGCASPATPSSAARSSSPGADDKLFEKAANVDNDVGNLSSSPGPGSQSHLQILSFDLEKVDIDSLISLGSSLVELLPQSDNLSSVDYSLLISTTMNKLLILKADISKVLEVTETEIDLLENELRSLKSESKDRFQCSEAVGSLLIPCAYRHVANVSACGDSNSSLEVKDGVDAKSSASTGDILCDTIISCNEKTAKAACEVFDKLLPEKCCKNENIGASSGSCSHNGTLIKEKFAERRRLARLKEKIITLKFKALHHLWKEDMRLVSIRKHRPKSHKKLESELRTTSNSHQKKRSSIPFRFPFPGNQLKLVPTSEMIKYTSQLLSESKHEIHRSTLKMPALILDQKDKMYTMFLSSNGLVEDPVAIEKERVMINPWTAEEKEIFLEKFAAYGKDFRKIATFLDHKTTADCVEFYYKNHKSDCFEKIKKKDDDKLGKFFKAKTDLIASGVKCNSEVNASSLDILSEASSVMADDIARDRKMRSGSSLWRGYNSKAMSRCDNIITERSNSFDILQDERETVAADVLASICGCLLSEATSSCITSSVDPVKGKRVVKKCVKAKPLSKKPPMPDITQNIDHETCSDESCGEMELTDWSDVEKAAFLHAVSLFGKDFAMIAQRVRTRSQYQCKVFFSKTQKRLRLNRMGQRSENVGSLVNDGVDGARSDADNACVVETGSANGSDSSGTKTGVDQPASDKNMYHDESNPVEASNLSADLYTSEEINRKVDHEDVNMVSNACVIGSEFKLCTDGNVGVLNGSDRSDSVREQRAIVMSDSIEIGKSEPSGGAVTELVSGTGTMEPCCSNSVAEVRLVSGVSSAQCGDELEGSTTCLVDGDEADTDVVIELKGNVHDSSTLVNTSLSSVDVSCQRLSVEAENEPQLCLEKPQFSGSSEGPLSNATSALQYSGAAVQYKKTSSQDLPSCDFQGNQDMTRHNCSSNLGHQPCTSENSLDHVEAARVLQCYNLQAPSEKEVNVNMSCSSSATELPLLSQKIDLEESPRNDVKIFGKILTNPSSTLGAKENEENGTHHPKLSSGSSSLKLTGHDNTGGKSTILNVDLNDCRVFENVPVGNKMQPVFSSLPDSAILLAKYPAAFGSYGLEAVSTLQQQVTKLVTSNGIGEPGILAGGSTTIADQFVGQTGSAIKEDEPVGEKKDLNS 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00900 1479 Gene3D - 677 749 - -
Trre11g00900 1479 Pfam Myb-like DNA-binding domain 700 741 IPR001005 -
Trre11g00900 1479 Pfam Myb-like DNA-binding domain 917 957 IPR001005 -
Trre11g00900 1479 MobiDBLite consensus disorder prediction 1 138 - -
Trre11g00900 1479 MobiDBLite consensus disorder prediction 996 1016 - -
Trre11g00900 1479 MobiDBLite consensus disorder prediction 291 316 - -
Trre11g00900 1479 MobiDBLite consensus disorder prediction 1 24 - -
Trre11g00900 1479 MobiDBLite consensus disorder prediction 261 290 - -
Trre11g00900 1479 MobiDBLite consensus disorder prediction 71 112 - -
Trre11g00900 1479 ProSiteProfiles SANT domain profile. 696 747 IPR017884 -
Trre11g00900 1479 MobiDBLite consensus disorder prediction 26 41 - -
Trre11g00900 1479 FunFam Metastasis-associated 1 family, member 3 697 757 - -
Trre11g00900 1479 MobiDBLite consensus disorder prediction 1351 1366 - -
Trre11g00900 1479 MobiDBLite consensus disorder prediction 996 1035 - -
Trre11g00900 1479 ProSiteProfiles SANT domain profile. 913 964 IPR017884 -
Trre11g00900 1479 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 487 1439 - -
Trre11g00900 1479 CDD SANT 918 956 IPR001005 -
Trre11g00900 1479 Gene3D - 872 974 - -
Trre11g00900 1479 SUPERFAMILY Homeodomain-like 916 964 IPR009057 -
Trre11g00900 1479 MobiDBLite consensus disorder prediction 250 346 - -
Trre11g00900 1479 MobiDBLite consensus disorder prediction 1336 1366 - -
Trre11g00900 1479 SUPERFAMILY Homeodomain-like 684 744 IPR009057 -
Trre11g00900 1479 MobiDBLite consensus disorder prediction 596 621 - -
Trre11g00900 1479 Coils Coil 427 454 - -
Trre11g00900 1479 SMART sant 697 745 IPR001005 -
Trre11g00900 1479 SMART sant 914 962 IPR001005 -
Trre11g00900 1479 MobiDBLite consensus disorder prediction 113 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00900 Trre-Chr11 7562872 7573007 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g00900 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00900 - - tpra:123910846 2568.5