Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00892 ATGGCTTGTAACACATTGATGAGTTCAGCTATTTCAGCTTTTCCATCACTTCTTTCTTCATCAAAATCAAGATTTGCAAATTCACTTCCAAGTTTTGCTTCTTGCAATGCATCTTCTTCTAAATTTACCATGACTGCTGATAATTGGATGCCTGGCCAGCCTAGACCACCTTATCTTGATGGTTCAGCTCCTGGTGACTTTGGATTTGATCCTCTTCGCCTTGGCGAAGTACCAGAGAATCTTGAGAGATTCAAAGAGTCTGAACTCATTCACTGCAGATGGGCAATGCTCGCTGTTCCAGGGATTTTGATACCAGAGGCATTAGGGTTAGGAAATTGGGTAAAAGCACAAGAATGGGCAGCACTTCCTGGTGGACAAGCAACCTACTTAGGAAACCCTGTTCCATGGGGTACCCTACCTACCATTTTGGTCATTGAATTCCTTTCTATTGCTTTTGTTGAACACCAAAGGAGTATGGAGAAAGACCCTGAGAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGTTACTCTAAAGACCCTAAAAAGTTCCATGAATACAAAATCAAAGAAGTTAAGAATGGACGTCTTGCTTTATTGGCTTTTGTTGGAATCTGTGTTCAACAATCAGCTTATCCAGGAACTGGACCTTTGGAGAATTTGGCTACTCACTTGGCTGATCCATGGCACAACAACATTGGAAATGTTCTTATTCCCCCTCAATAG 729 0.4198 MACNTLMSSAISAFPSLLSSSKSRFANSLPSFASCNASSSKFTMTADNWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILIPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGNVLIPPQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00892 242 Gene3D Chlorophyll a/b binding protein domain 50 236 - -
Trre11g00892 242 FunFam Chlorophyll a-b binding protein, chloroplastic 50 236 - -
Trre11g00892 242 Pfam Chlorophyll A-B binding protein 56 210 IPR022796 -
Trre11g00892 242 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 22 235 IPR001344 GO:0009765|GO:0016020
Trre11g00892 242 SUPERFAMILY Chlorophyll a-b binding protein 44 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00892 Trre-Chr11 7489020 7491109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00892 1 197 Chloroplast and Mitochondria Gene Families AT3G54890 78.109 3.36e-104 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00892 K08907 - gmx:100800350 437.958