Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00881 ATGGAGAGACAAGAACCATCTCAACCTACACATCAAGGTAATGAAAAGAAAAAACATTATAGAGGTGTGAGGCAGAGACCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCTAAAAAAGGAGCAAGGGTTTGGCTTGGCACCTTTGACACAGCTGAAGGTGCAGCAAGAGCTTATGATGAAGCTGCCTTAAAGTTCAAAGGAAACAAAGCCAAAACAAATTTCCCTCAACCCGTTTCTCATTCGCCTTCAAATCCATCGCCACCGCGTAATAATAATAATGCTTCATCTTCTTCTTCCAAGTTTGCTCCACCAAAACCTCTTTTTCCGTTGTCATCAACGGAAGAAGTATTCCCAAACCTAATGCAATATGCTCAAGTACTCTGTAGTAAGGATGATGAAGATCTTCGACGTGCTGCTTCAAGTCTTTACAATAATAATTATCACCATCACAACAATAACAATAATGAGCAATTTCGTTATTATAATTTGCCGCCATTCTTCTCAACACCATCAACAATGTCTCCGTCATCTACTTCAAATGATGTTGTGCCTAGAGTTGCAGATCGTCGTGGTTTTGATGAAAGGAACGTGAAAGGAATATAG 606 0.4026 MERQEPSQPTHQGNEKKKHYRGVRQRPWGKWAAEIRDPKKGARVWLGTFDTAEGAARAYDEAALKFKGNKAKTNFPQPVSHSPSNPSPPRNNNNASSSSSKFAPPKPLFPLSSTEEVFPNLMQYAQVLCSKDDEDLRRAASSLYNNNYHHHNNNNNEQFRYYNLPPFFSTPSTMSPSSTSNDVVPRVADRRGFDERNVKGI 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00881 201 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Trre11g00881 201 PANTHER DNA-BINDING DOMAIN 9 134 IPR044808 GO:0003700|GO:0009873
Trre11g00881 201 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Trre11g00881 201 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Trre11g00881 201 MobiDBLite consensus disorder prediction 1 34 - -
Trre11g00881 201 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Trre11g00881 201 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Trre11g00881 201 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Trre11g00881 201 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Trre11g00881 201 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Trre11g00881 201 MobiDBLite consensus disorder prediction 1 16 - -
Trre11g00881 201 MobiDBLite consensus disorder prediction 73 103 - -
Trre11g00881 201 MobiDBLite consensus disorder prediction 69 108 - -
Trre11g00881 201 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00881 Trre-Chr11 7400220 7401490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00881 1 144 AP2-EREBP Transcription Factor Family AT5G13330 45.752 2.89e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre11g00881 AP2 6.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00881 - - tpra:123908943 296.204