Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00862 ATGGCCTTAAATAAGACAGGAAACTTGTTAGGTACCAATGCCGGAGACGAGCATGGCTTGTTTCCTCAATACAACCAACAAGAATTACACAGTGGTGTTACAAATGTACATAATAATAATATCCCTAAACATGATGGAAGAGTTCCTGTTTCACCTGATATACCTCAAAAGCGCGAGAATAGGTTTGGATTGAATAAGGAGAACGGCCGTGTTAGATACGAAGACCTCACCAATATTTTAGGGTTGAAGAGAATGGACTCTGAGACTTCTTCTGAGATAGGTGAGTTTATCCCTAAAAGACAGCCAGCAGCACAAGAGATTGAAAACGGCGTTTCTCCAAACATTTCATGCAAAACTCAAAAGGGAGATGGCGACAACAGTGGCCGTGGTGTGTTGAAGAAGAGCTTTAGTGAAGTAATTAGTGACCAACATGGTACTAGGCCACCTGTATCACCGCCTATTTGCAGACATGAAAGATCTCACTCTAATGGATTTTCTGGTTCCGGAATTTTAGACGATTCTTTATCTTCGGGGAAAATAAAGTTTCTTTGCAGCTTCGGTGGAAAAATATTACCTAGGCCCGGTGATAGTAAACTCAGATATGTTGGCGGAGAAACCCATATTATATCTATCCGAAAGGATATTTTATGGGAAGAGCTTATGAACAAGACTTTAGGTATTTGCAGTCAACCTCACACGATCAAATACCAGCTTCCCGGGGAGGATCTTGATGCTCTAATATCGGTTTCTTCGGATGAAGATCTTCAAAATATGATAGAGGAATATCATGGACTTGAAAGTCACGAAGGTTCTCAGAAACTTCGAATATTTTTAGTTCCTTTGGGTGAATCTGAAGAGACACCGTCAACCGAGGCAAACACCGTTCTGCAGAATGATCCTGATTACCAATACGTTGTTGCTTTAAACGGCGTAATAGACCCTAGTCCTAAGAAAAACACCGGTGGACAGAGTTTGATAAACGAAGCAAATCAGCCAGTGACAACTTTCAATTTTACTCCAATAATTGTGGCTTCTCCTTTGGAGACCAGAGACGGTAATAAACGTATTAGTGCTTTAACAGATGGAATTTTGAATGATTCCCTAAATCTTCAAAGTGCATTGCGAATTTCTCCTACTCCGGTTCAAGTTGCAGGTTCTAGTACAGGTTATATACAATTGCTTGGTAACAACTCATGCCAGGGAAGTATCGACAGCAATGCATCATTTGTTACCGCTCAGGTAAACTCCGGAAACTCGAGCATAAACGCTGCTGATTGCCGATATCCTCAACAAGCATCTGTTACTTTGTTAAGTGACGGTCATTCTCGTCAACATGGCGATGTTGGTCCCCCGATGAATCTCAATGGACAGTATTTTGACAACTACAATCCAGGCAATGGTTACGGTGATGAAGTTTTTGGTGGAACCTTGCATAAGGATAGAATACTCCACTCTGGAAATCCAATTGCTCAACAGGCCGAATCATATGGAACTAATAATGATCCGCCTCATGGGATGTCTCATGCATTTTCTGATTCGCAATTGCATGAGAGTGGAGCAAGGTCTGGTTACCGCTCACAAGAAGGAATTTCCCCGTCTTTCTCATTAAACCTTGATAAGTCCCAATTATCCTCGATGTTAGGTGTCTCACAAGTTAACCTTATGGAGGGTCAACACGATCCCTTCCTTCATCATCCTCAAATACAAAGTAGGATACCAAATGTGGAGTCAGCTGAGATGCATAGACGGCAAGGTATGGCATCTTCGTCTCCCTACTCAGAATCAGTAGGAACGAATGATCGTATCAATAAGGATAGTATTTTAACTGACAAAAAGTACCTTAATGCTCAAACTGACTTAAGTGGATCCGGCTTTGTAGAAAAGAACATCCCGGAACATGCTTTTAAATCAGAAAGGAGGATGATAAATGGAGAAAATAATTCTATTCCTAAGAAGGATAACAAGGTTTACGAGGGAAATTCCACTGTCAATTATATGAGTGAATTGCATCTTTTGGATACATTCCCTATTAATGACACAAGTGCTAAGATTGGTATGCAAAATAATCGGGAACAACCATGTGAAGACATGCATCCTTCGTCATCAGGCATGATGGGACTCTCTCTAAATAACCTCGTGGACAAGACCCCGTCTGATCTGAATGGTAAACAAGGAATTGATTTTTCAGCCAGAAACATTGATTTAAATGCTCCGATCTTAATAGGTGCAGAAAGCTCGTGTGGCAAAAGTTCTGAAAGAGATCATATGTTCAAGTTTTCCTTTGATCCACATTCTCTTAAATCTGCACAAATTCAGCCTCCTCAGAATCAAACCGCAGCAGTTTTTCATGATAATCCAACAATAAACTCTGAAAGTTTGTATCCTACTGTACTTCATGATGATGTCCCTCCAAGCTTAAACTTGCCGGTTAGTGACCTGGATAATGCAAGCAACAATATTTCCTTTATAAAGGCGCCTTCTTTTCTCGATGACTGGCTTACAAGCACCGATCAAATGGCTGTTCAGTTTAAACACGAACATTCTGCCTCCGGACTGTCAAAAGTTGAAGATGTAGTTTCAGGACAATCAAAAAATTCAGAAAGGTATAATGATGCAAACAGAATGGCGCCATTTGTTGCAGTAGAAGATGTGACTGGTGTTGTTCCTTCACATCAAAAGTCTTCAATAGTACACACCCCGCATAATTTTGATGAAGCTGAAAGTGATTTATCTCCATCTCATACGGAAGTAGAGAGCACCATCCCAGAGTCTGATCTCGAGGATTTTAAAGACGACCAAACAGACATGAATGACTTCCTTTCTGATGTAATGATAGCAGAAATGGAGGCCAGCATATATGGTTTACAGATAATTAAGAATGTTGATCTTGAAGAACTTATGGAGTTAGGATCTGGTACCTATGGAACTGTTTATCATGGAAAATGGCGGGGAACAGATGTCGCAATAAAGAGAATTAAAAAGAGCTGCTTTGCAGGGAGATCTTCTGAACAAGAACGGTTGGCAAAAGATTTCTGGAGAGAGGCACAGATCCTGTCAAATCTTCACCATCCCAATGTGCTCGCATTTTATGGAATCGTACCGGACGGAGATGGTGGAACCTTAGCAACTGTAACAGAATATATGGTTAATGGTTCCCTTAGGCATGTCCTTGTCAAGAACAACAGATTACTAGATCGTCGTAAAAAGCTTATAATTGCCATGGATGCAGCTTTTGGTATGGAATATTTGCATTCGAAGAATATTGTCCATTTTGATTTGAAGTGTGACAATTTACTTGTCAATCTAAGGGATCCACAACGACCAATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGTAACACGCTTGTATCTGGGGGTGTGCGAGGAACCCTTCCATGGATGGCACCAGAGTTGTTGAATGGTAATAGCAGCCGGGTTTCCGAAAAGGTTGATGTTTTCTCATTCGGCATCTCAATGTGGGAATTATTGACAGGAGAGGAACCTTATGCAGATATGCATTGTGGTGCCATTATTGGCGGAATTGTAAAGAACACACTCCGACCACCAATTCCAGCACGATGTGATCCTGAATGGAGAAAGCTTATGGAAGAATGTTGGTCACGTGACCCCGAATGTCGGCCATCATTCACCGAGATAACAAGCAGGTTAAGATCTATGTCTATGGCCACTCAAGGAAAGGGAAATTATCAAGCATGGCAGTTAAGACCTAGTAATGAACTTTGA 3753 0.4098 MALNKTGNLLGTNAGDEHGLFPQYNQQELHSGVTNVHNNNIPKHDGRVPVSPDIPQKRENRFGLNKENGRVRYEDLTNILGLKRMDSETSSEIGEFIPKRQPAAQEIENGVSPNISCKTQKGDGDNSGRGVLKKSFSEVISDQHGTRPPVSPPICRHERSHSNGFSGSGILDDSLSSGKIKFLCSFGGKILPRPGDSKLRYVGGETHIISIRKDILWEELMNKTLGICSQPHTIKYQLPGEDLDALISVSSDEDLQNMIEEYHGLESHEGSQKLRIFLVPLGESEETPSTEANTVLQNDPDYQYVVALNGVIDPSPKKNTGGQSLINEANQPVTTFNFTPIIVASPLETRDGNKRISALTDGILNDSLNLQSALRISPTPVQVAGSSTGYIQLLGNNSCQGSIDSNASFVTAQVNSGNSSINAADCRYPQQASVTLLSDGHSRQHGDVGPPMNLNGQYFDNYNPGNGYGDEVFGGTLHKDRILHSGNPIAQQAESYGTNNDPPHGMSHAFSDSQLHESGARSGYRSQEGISPSFSLNLDKSQLSSMLGVSQVNLMEGQHDPFLHHPQIQSRIPNVESAEMHRRQGMASSSPYSESVGTNDRINKDSILTDKKYLNAQTDLSGSGFVEKNIPEHAFKSERRMINGENNSIPKKDNKVYEGNSTVNYMSELHLLDTFPINDTSAKIGMQNNREQPCEDMHPSSSGMMGLSLNNLVDKTPSDLNGKQGIDFSARNIDLNAPILIGAESSCGKSSERDHMFKFSFDPHSLKSAQIQPPQNQTAAVFHDNPTINSESLYPTVLHDDVPPSLNLPVSDLDNASNNISFIKAPSFLDDWLTSTDQMAVQFKHEHSASGLSKVEDVVSGQSKNSERYNDANRMAPFVAVEDVTGVVPSHQKSSIVHTPHNFDEAESDLSPSHTEVESTIPESDLEDFKDDQTDMNDFLSDVMIAEMEASIYGLQIIKNVDLEELMELGSGTYGTVYHGKWRGTDVAIKRIKKSCFAGRSSEQERLAKDFWREAQILSNLHHPNVLAFYGIVPDGDGGTLATVTEYMVNGSLRHVLVKNNRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPIPARCDPEWRKLMEECWSRDPECRPSFTEITSRLRSMSMATQGKGNYQAWQLRPSNEL 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00862 1250 CDD STKc_MAP3K-like 969 1226 - -
Trre11g00862 1250 SMART PB1_new 194 281 IPR000270 GO:0005515
Trre11g00862 1250 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1088 1100 IPR008271 GO:0004672|GO:0006468
Trre11g00862 1250 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 199 281 - -
Trre11g00862 1250 ProSiteProfiles Protein kinase domain profile. 963 1231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00862 1250 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 956 1050 - -
Trre11g00862 1250 MobiDBLite consensus disorder prediction 39 59 - -
Trre11g00862 1250 CDD PB1_UP2 183 278 - -
Trre11g00862 1250 Pfam PB1 domain 196 280 IPR000270 GO:0005515
Trre11g00862 1250 Pfam Protein tyrosine and serine/threonine kinase 966 1226 IPR001245 GO:0004672|GO:0006468
Trre11g00862 1250 SMART serkin_6 963 1232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00862 1250 PRINTS Tyrosine kinase catalytic domain signature 1082 1100 IPR001245 GO:0004672|GO:0006468
Trre11g00862 1250 PRINTS Tyrosine kinase catalytic domain signature 1153 1175 IPR001245 GO:0004672|GO:0006468
Trre11g00862 1250 PRINTS Tyrosine kinase catalytic domain signature 1197 1219 IPR001245 GO:0004672|GO:0006468
Trre11g00862 1250 PRINTS Tyrosine kinase catalytic domain signature 1045 1058 IPR001245 GO:0004672|GO:0006468
Trre11g00862 1250 Gene3D Phosphorylase Kinase; domain 1 956 1050 - -
Trre11g00862 1250 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1051 1242 - -
Trre11g00862 1250 ProSitePatterns Protein kinases ATP-binding region signature. 969 994 IPR017441 GO:0005524
Trre11g00862 1250 SUPERFAMILY Protein kinase-like (PK-like) 958 1225 IPR011009 -
Trre11g00862 1250 PANTHER SERINE-THREONINE PROTEIN KINASE 224 1229 - -
Trre11g00862 1250 Gene3D - 198 280 - -
Trre11g00862 1250 Gene3D Transferase(Phosphotransferase) domain 1 1051 1247 - -
Trre11g00862 1250 SUPERFAMILY CAD & PB1 domains 196 282 - -
Trre11g00862 1250 MobiDBLite consensus disorder prediction 496 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00862 Trre-Chr11 7314066 7320049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00862 177 309 MAP Kinase Kinase Kinase AT1G16270 61.654 5.35e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre11g00862 PK_Tyr_Ser-Thr 4.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00862 - - aprc:113862751 1584.7