Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00816 ATGGGGCAGGAGAGTCAGAGCCTCAAGGATTCCGCTGTTGTAGACAGTAGCATGGTCGTTGGCAAAGAGAATGACTGTTCGAGTGAAAATGTTTGTCCTGTTGGCCCTAGTCCGATGGAAATCAATGATGAACGTCATACCTCAAATATTACTAGTGAAGATAAATTCCATACTGATGTCGAAAGAGCACAGCTGTGTCAGAACCCTGATGCTACCTCTATATCTGTGACCGATACTGATGTAACAAACGAGGAGGATATATATGTGGAACCAAATATTGGCATGGAGTTTAGATCAGAAGAGCATGCTTACAAATGTTATAACAATTATGCTGTTCTGAAAGGTTTCAGCATAAGAAAGGATTTCATCAACAAAAGTAGGGTAGATGGTTCAGTGGTGTCCAGAAGATTCACCTGCCATAGACAGGGTTTTCGGTCTAATAAAGATTATAAAAATCCGAAGAATATCCAACAGGAAACAAGGACTGGTTGCTTGGCACATATGACCATTTCTCGTCAGTCAAATAGCAAGTTTTGTGTCACTAGTTTTGAAATAGAACACAATCATGAGTTTGTAACACCCTCTGATGCTCATATGTTGCCATCACATAAGAAATTGAGTTTTGCTCAAGCTCTTGACGTGAATATAAATGAGTCGACTTTGGATGGGGTACCGAAACTGGGAATGGGATTTGATTCAGAGGAGCATGCATATGAATTTTATAATACATATGCTGCACAAGTAGGCTTCAGTGTGAGAAAAGATTATGTAAATAGGAGTAAAGTTGACGGCGCTGTAGCATCAAGAAGGTATACTTGCTTCAGAGAAGGTTTTCGGCAGAAAGAGAAACGAGGTAAGAATGTAAAGAGACCTCGGAAGGATACTAGAATCGGGTGTTTAGCACAACTGATTATTTCTCGTCAGTCTGATGGCAGGTATCATATAACTCATTTTGAAGAAAAACACAATCATGAGCTTGTTGCTGCATGTAGAGTTCATATGTTACGATCACAGAAGAGATTAGCTGCAACTCGTGTTGAAGACAATATTGTAGCTGGAAGTAGTGCGCTGCCGAAGCCAGCCTCTGCATCCAACTGCAGGACAGTTGAAGGTTTTAACGATTTAGATTATGATCCTGTGGATTGTGAATATCAACTACCTTTCAAATGTACAAGAGAAATAAAAGAGGATGAAATCGAAAAGATTAGGCACTACTTTCAAAGCAAGAAAGCAAAGAATCCTTCTTTCTTTTATGCTTTTCAGCTTGATGCCGAGAATCAAATAACTAATATATTTTGGGCTGATGAAAAGATGATAGTTGACTACAGTGATTTTGGTGACGTTGTTTGTTTTGATACGAGTTATAAATTTTATAAGGACTCACGCCCGTTTGTTCCATTTCTCGGTATAAATAATCACAGGCAAATGAATATCTTCGGGGCAGCACTTCTATATGATGAATCTGTGGAATCTTTTAAGTGGCTGTTTCATGTTTTCATTGAGGCTATGTCTGGAACCAAGCCAAAGACAATCCTAAGAGACCAAGATGCAATAATAGCCGAAGCTATTAATTCCATATCACCTCAAACAAAACAACGAGTTTATGTTTGGCATGTCTACCAAGATGCCCTCAAGCAACTGAGTCATATGTTTGTTGAATCCGATTCTTTTGTACATGATTTGAGCTGCTGCTTTTTTAATCACGAGGAAGAAGAGGATTTTGTTAATGCATGGAATGCTCTCATGAACATGTATAATCTGTGGGAAAACGAATGGTTACGTCAAATATATGAAAGCAGACACCAATGGGCCATAGCTTACAAAAGACACATTTTTTGCGCCGATCTCACAAGCTTGCTCATGCGAGAAAATCTTATTGGCAACTTGAAAAAGCACCTGAAGAATGACTCGAGTGTTCTTCCATTTCTCAAGCATCTTGGAAAGATGGTGACCGATTGGCACTACAAGGAATTAGAAGCTAATTATGACATAAGCCGGCATATGCCAGCCCTATTGGGCGATATTGTTACATTAAAGCATGCAAGAGATCCATACACACCAAAGATATTTGAGTTATTCCAGAAAGAATATGAAGCATGTTTAAATCTAGTGCTAAAGCCTTGCAGTGAGAGTGGTTCGTTGTATAATTATAAAGTTAGCGTATATGAACAAGTCCGTGAGTATATGGTTACTTTCGATTCGTCTAGTGAGACTGTTAGTTGCAGCTGTATGAAGTTTGAGTGTGTGGGAGTCTTGTGCTGCCATGCATTAAAAGTTCTTGATTATAGGAACATAAGGATAGTTCCATCCAAGTACATCTTAAAGAGATGGACGAAAGATGCTAGAGTTTGA 2352 0.3899 MGQESQSLKDSAVVDSSMVVGKENDCSSENVCPVGPSPMEINDERHTSNITSEDKFHTDVERAQLCQNPDATSISVTDTDVTNEEDIYVEPNIGMEFRSEEHAYKCYNNYAVLKGFSIRKDFINKSRVDGSVVSRRFTCHRQGFRSNKDYKNPKNIQQETRTGCLAHMTISRQSNSKFCVTSFEIEHNHEFVTPSDAHMLPSHKKLSFAQALDVNINESTLDGVPKLGMGFDSEEHAYEFYNTYAAQVGFSVRKDYVNRSKVDGAVASRRYTCFREGFRQKEKRGKNVKRPRKDTRIGCLAQLIISRQSDGRYHITHFEEKHNHELVAACRVHMLRSQKRLAATRVEDNIVAGSSALPKPASASNCRTVEGFNDLDYDPVDCEYQLPFKCTREIKEDEIEKIRHYFQSKKAKNPSFFYAFQLDAENQITNIFWADEKMIVDYSDFGDVVCFDTSYKFYKDSRPFVPFLGINNHRQMNIFGAALLYDESVESFKWLFHVFIEAMSGTKPKTILRDQDAIIAEAINSISPQTKQRVYVWHVYQDALKQLSHMFVESDSFVHDLSCCFFNHEEEEDFVNAWNALMNMYNLWENEWLRQIYESRHQWAIAYKRHIFCADLTSLLMRENLIGNLKKHLKNDSSVLPFLKHLGKMVTDWHYKELEANYDISRHMPALLGDIVTLKHARDPYTPKIFELFQKEYEACLNLVLKPCSESGSLYNYKVSVYEQVREYMVTFDSSSETVSCSCMKFECVGVLCCHALKVLDYRNIRIVPSKYILKRWTKDARV 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00816 783 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 79 210 IPR031052 GO:0006355
Trre11g00816 783 Pfam MULE transposase domain 448 541 IPR018289 -
Trre11g00816 783 SMART 26again6 739 766 IPR006564 GO:0008270
Trre11g00816 783 Pfam FAR1 DNA-binding domain 239 327 IPR004330 -
Trre11g00816 783 Pfam FAR1 DNA-binding domain 107 192 IPR004330 -
Trre11g00816 783 ProSiteProfiles Zinc finger SWIM-type profile. 728 764 IPR007527 GO:0008270
Trre11g00816 783 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00816 Trre-Chr11 6826041 6828392 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre11g00816 MULE 6.8e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00816 K17604 - tpra:123911704 1501.88