Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00800 ATGAGCAACTTGCTAGAATTATCACTAAATGGGAATAATATAAATGGACCAATACCTGGTACATTCAAAGGGTTGCATAAACTTGGGTTATTGGACCTTGGCAACAATGGACTACAAGGATCATTTATTGAGGAGCTTTGTGAAATTGAAATTTTGGGAAATAACAGTTTCAACAATATGATACCCTTCTCTCTTTGGAATCTCACAAATATCTTAGAGGTAAATTTGTCTTCTAATTCTTTTGTTGGTAATCTTCCATATGAGATTGGGAATTTGAAAATTCTCTCCTTAGCGCATAACAAACTGAATGGGTCAATTCCCACATCACTTGGTGGTGACATGGTAAGCTTGATCTCCTTGGACTTATCCCAAAATATGTTAACTGGTATTATTCCAAAATCCTTAGAATCACTTTCATATCTTCAAAACCTCAACTTGTCATATAATAGATTACAAGGAGAGATTCCCGATGTTGGAATTTTAAAAAGTTTCACGGCTCAATCTTTTATGAATAATGAAGCACTTTGTGGCAATCCTCGTCTGAATGTACCTGTGTGTGATAATTCCCATAGTTCAACGAAAAAGAAGTTACTGCTCAAATGTATAATTCCCATACTTGTGTCATCCATTTTGATTGTTGCATGCATCATAATTTTGAAAGTTAAGAAAAGGAAAATGGTTGAAAATACTCTTGAAAGGGGTTTTTCAACTTTAGGAGCTCCAAGAAGAATATCCTATTATGAAGTTGTGCAAGCAACTAATGGATTCAATGAGAGTAACTTACTTGGAAAGGGAGGATTTGGCTCTGTGTATCGGGGGGCGCTTACTCATGGTGAGATGATTGCAGTTAAAATTATCAGTGGTGTTTCGAATCTTGATTTCAAAGCATTGGTGATGGAGTTCATGTTAAATGGAAGTGTGGACAAATGGTTATATTCAAATAACTATTGTTTAAACTTCTTACAAAGGTTAAACATAATGATTGATGTTGCATCCGCATTGGAATATCTCCATCACGGTTCTACATTTCCAGTGGTTCATTGTGATCTAAAGCCCTCTAATGTGTTGTTGGATGAAAATATGGTTGCACATGTTAGTGATTTTGGCATTGCCAAGCTCATGGACGAAGGACAATCTAAAGCTCAAACAAACACATTGGCTACTATTGGATACCTTGCACCAGAGTACGGATCTAGTGGAATTGTTTCTGTCAAAGGAGATGTTTACAGCTATGGCATTATGCTAATGGAAATCTTCACAAGAAAAAAGCCAACAGATGAAATGTTTGTTGAAGAACTAAGTTTGAAAACATGGATCAGTCGATCGTTGCCTAATTCAATTATGGATGTCCTGGATTCTAATTTAGTCCAACAGAATGGGGAACAAATTGATGACATATTAACTTACATGTCATCTATTTTTGGTTTAGCATTGAATTGTTGTGAAGATTCACCTGAAGCAAGAATTAATATGGTAGATTTTACTGCGTCACTAATCAAAATTAAGACTTTGGTTCTCGGTGTAAATAGGATCTAG 1536 0.3555 MSNLLELSLNGNNINGPIPGTFKGLHKLGLLDLGNNGLQGSFIEELCEIEILGNNSFNNMIPFSLWNLTNILEVNLSSNSFVGNLPYEIGNLKILSLAHNKLNGSIPTSLGGDMVSLISLDLSQNMLTGIIPKSLESLSYLQNLNLSYNRLQGEIPDVGILKSFTAQSFMNNEALCGNPRLNVPVCDNSHSSTKKKLLLKCIIPILVSSILIVACIIILKVKKRKMVENTLERGFSTLGAPRRISYYEVVQATNGFNESNLLGKGGFGSVYRGALTHGEMIAVKIISGVSNLDFKALVMEFMLNGSVDKWLYSNNYCLNFLQRLNIMIDVASALEYLHHGSTFPVVHCDLKPSNVLLDENMVAHVSDFGIAKLMDEGQSKAQTNTLATIGYLAPEYGSSGIVSVKGDVYSYGIMLMEIFTRKKPTDEMFVEELSLKTWISRSLPNSIMDVLDSNLVQQNGEQIDDILTYMSSIFGLALNCCEDSPEARINMVDFTASLIKIKTLVLGVNRI 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00800 511 Gene3D Transferase(Phosphotransferase) domain 1 305 505 - -
Trre11g00800 511 ProSiteProfiles Leucine-rich repeat profile. 140 162 IPR001611 GO:0005515
Trre11g00800 511 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 302 509 - -
Trre11g00800 511 SUPERFAMILY Protein kinase-like (PK-like) 237 498 IPR011009 -
Trre11g00800 511 SMART LRR_typ_2 114 137 IPR003591 -
Trre11g00800 511 SMART LRR_typ_2 89 113 IPR003591 -
Trre11g00800 511 SMART LRR_typ_2 138 163 IPR003591 -
Trre11g00800 511 SMART LRR_typ_2 1 24 IPR003591 -
Trre11g00800 511 PRINTS Leucine-rich repeat signature 138 151 - -
Trre11g00800 511 PRINTS Leucine-rich repeat signature 117 130 - -
Trre11g00800 511 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524
Trre11g00800 511 Pfam Protein tyrosine and serine/threonine kinase 289 493 IPR001245 GO:0004672|GO:0006468
Trre11g00800 511 PANTHER OS04G0122200 PROTEIN 2 502 - -
Trre11g00800 511 Gene3D Phosphorylase Kinase; domain 1 227 304 - -
Trre11g00800 511 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 62 183 - -
Trre11g00800 511 SMART serkin_6 256 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00800 511 ProSiteProfiles Protein kinase domain profile. 256 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00800 511 Gene3D Ribonuclease Inhibitor 1 195 IPR032675 -
Trre11g00800 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 345 357 IPR008271 GO:0004672|GO:0006468
Trre11g00800 511 Pfam Leucine rich repeat 91 151 IPR001611 GO:0005515
Trre11g00800 511 SUPERFAMILY L domain-like 2 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00800 Trre-Chr11 6639850 6641931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00800 3 510 Receptor kinase-like Gene Family AT3G47570 35.619 3.37e-100 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre11g00800 PK_Tyr_Ser-Thr 2.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00800 - K13420 mtr:25481440 667.922