Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00799 ATGAGCAACTTGCTAGAATTATCACTAAATGGGAATAATATAAATGGACCAATACCTGGTACATTCAAAGGGTTGCATAAACTTGGGTTATTGGACCTTGGCAACAATGGACTACAAGGATCATTTATTGAGGAGCTTTGTGAAATTGAAATTTTGGGAAATAACAGTTTCAACAATATGATACCCTTCTCTCTTTGGAATCTCACAAATATCTTAGAGGTAAATTTGTCTTCTAATTCTTTTGTTGGTAATCTTCCATATGAGATTGGGAATTTGAAAATTCTCTCCTTAGCGCATAACAAACTGAATGGGTCAATTCCCACATCACTTGGTGGTGACATGGTAAGCTTGATCTCCTTGGACTTATCCCAAAATATGTTAACTGGTATTATTCCAAAATCCTTAGAATCACTTTCATATCTTCAAAACCTCAACTTGTCATATAATAGATTACAAGGAGAGATTCCCGATGTTGGAATTTTAAAAAGTTTCACGGCTCAATCTTTTATGAATAATGAAGCACTTTGTGGCAATCCTCGTCTGAATGTACCTGTGTGTGATAATTCCCATAGTTCAACGAAAAAGAAGTTACTGCTCAAATGTATAATTCCCATACTTGTGTCATCCATTTTGATTGTTGCATGCATCATAATTTTGAAAGTTAAGAAAAGGAAAATGGTTGAAAATACTCTTGAAAGGGGTTTTTCAACTTTAGGAGCTCCAAGAAGAATATCCTATTATGAAGTTGTGCAAGCAACTAATGGATTCAATGAGAGTAACTTACTTGGAAAGGGAGGATTTGGCTCTGTGTATCGGGGGGCGCTTACTCATGGTGAGATGATTGCAGTTAAAGTAATTGATTTGAAATCAGATGTAAAATCAAAAAGCTTCGATACAGAATGTAATGCCATGAAAAATCTCAGACATCGAAATTTGGTTAAGATTATCAGTGGTGTTTCGAATCTTGATTTCAAAGCATTGGTGATGGAGTTCATGTTAAATGGAAGTGTGGACAAATGGTTATATTCAAATAACTATTGTTTAAACTTCTTACAAAGGTTAAACATAATGATTGATGTTGCATCCGCATTGGAATATCTCCATCACGGTTCTACATTTCCAGTGGTTCATTGTGATCTAAAGCCCTCTAATGTGTTGTTGGATGAAAATATGGTTGCACATGTTAGTGATTTTGGCATTGCCAAGCTCATGGACGAAGGACAATCTAAAGCTCAAACAAACACATTGGCTACTATTGGATACCTTGCACCAGAGTACGGATCTAGTGGAATTGTTTCTGTCAAAGGAGATGTTTACAGCTATGGCATTATGCTAATGGAAATCTTCACAAGAAAAAAGCCAACAGATGAAATGTTTGTTGAAGAACTAAGTTTGAAAACATGGATCAGTCGATCGTTGCCTAATTCAATTATGGATGTCCTGGATTCTAATTTAGTCCAACAGAATGGGGAACAAATTGATGACATATTAACTTACATGTCATCTATTTTTGGTTTAGCATTGAATTGTTGTGAAGATTCACCTGAAGCAAGAATTAATATGGTAGATTTTACTGCGTCACTAATCAAAATTAAGACTTTGGTTCTCGGTGTAAATAGGATCTAG 1626 0.3524 MSNLLELSLNGNNINGPIPGTFKGLHKLGLLDLGNNGLQGSFIEELCEIEILGNNSFNNMIPFSLWNLTNILEVNLSSNSFVGNLPYEIGNLKILSLAHNKLNGSIPTSLGGDMVSLISLDLSQNMLTGIIPKSLESLSYLQNLNLSYNRLQGEIPDVGILKSFTAQSFMNNEALCGNPRLNVPVCDNSHSSTKKKLLLKCIIPILVSSILIVACIIILKVKKRKMVENTLERGFSTLGAPRRISYYEVVQATNGFNESNLLGKGGFGSVYRGALTHGEMIAVKVIDLKSDVKSKSFDTECNAMKNLRHRNLVKIISGVSNLDFKALVMEFMLNGSVDKWLYSNNYCLNFLQRLNIMIDVASALEYLHHGSTFPVVHCDLKPSNVLLDENMVAHVSDFGIAKLMDEGQSKAQTNTLATIGYLAPEYGSSGIVSVKGDVYSYGIMLMEIFTRKKPTDEMFVEELSLKTWISRSLPNSIMDVLDSNLVQQNGEQIDDILTYMSSIFGLALNCCEDSPEARINMVDFTASLIKIKTLVLGVNRI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00799 541 ProSiteProfiles Leucine-rich repeat profile. 140 162 IPR001611 GO:0005515
Trre11g00799 541 SUPERFAMILY L domain-like 2 179 - -
Trre11g00799 541 Gene3D Phosphorylase Kinase; domain 1 239 331 - -
Trre11g00799 541 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 332 539 - -
Trre11g00799 541 SMART LRR_typ_2 114 137 IPR003591 -
Trre11g00799 541 SMART LRR_typ_2 89 113 IPR003591 -
Trre11g00799 541 SMART LRR_typ_2 138 163 IPR003591 -
Trre11g00799 541 SMART LRR_typ_2 1 24 IPR003591 -
Trre11g00799 541 FunFam Leucine-rich repeat receptor-like protein kinase 91 186 - -
Trre11g00799 541 Gene3D Ribonuclease Inhibitor 1 195 IPR032675 -
Trre11g00799 541 ProSiteProfiles Protein kinase domain profile. 256 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00799 541 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524
Trre11g00799 541 PANTHER OS04G0122200 PROTEIN 2 532 - -
Trre11g00799 541 PRINTS Leucine-rich repeat signature 117 130 - -
Trre11g00799 541 PRINTS Leucine-rich repeat signature 138 151 - -
Trre11g00799 541 Gene3D Transferase(Phosphotransferase) domain 1 332 535 - -
Trre11g00799 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672|GO:0006468
Trre11g00799 541 FunFam Serine-threonine protein kinase plant-type 237 331 - -
Trre11g00799 541 Pfam Leucine rich repeat 91 151 IPR001611 GO:0005515
Trre11g00799 541 SUPERFAMILY Protein kinase-like (PK-like) 237 528 IPR011009 -
Trre11g00799 541 SMART serkin_6 256 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00799 541 Pfam Protein kinase domain 257 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00799 Trre-Chr11 6639850 6641931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00799 3 540 Receptor kinase-like Gene Family AT3G47570 37.960 3.11e-117 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre11g00799 Pkinase 5.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00799 - K13420 mtr:25481440 734.947