Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00790 ATGATTGTCACTTTCGGTCCCACTGGGTTGACAACTGAAGTTAAGTCTGTTGAGATGCACCACGAGGCTCTCACAGAAGCTCTTCCAGGAGACAATGTCGGATTCAATGTTAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTTGTTGCATCCAACTCCAAGGATGACCCTGCTAAGGAAGCTGCCAACTTCACATCCCAAGTCATCATCATGAACCACCCTGGACAGATCGGTAACGGTTATGCACCAGTGCTCGATTGCCACACCTCTCACATTGCTGTCAAGTTTGCTGAACTTGTCACCAAGATCGACAGACGATCTGGTAAGGAGATTGAGAAGGAGCCCAAGTTTTTGAAGAATGGTGATGCTGGTATCATTAAGATGATTCCCACCAAGCCCATGGTGGTTGAGACTTTCTCTGAGTATCCTCCTCTTGGTCGTTTTGCTGTGAGAGACATGAGACAAACTGTTGCTGTTGGAGTCATCAAGGGTGTGGAGAAGAAGGACCCAACTGGAGCCAAGGTCACCAAAGCTACTGCCAAGAAGAAATGA 555 0.4739 MIVTFGPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKGVEKKDPTGAKVTKATAKKK 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00790 184 Gene3D Translation factors 61 167 - -
Trre11g00790 184 Pfam Elongation factor Tu C-terminal domain 58 166 IPR004160 -
Trre11g00790 184 CDD EF1_alpha_III 60 163 - -
Trre11g00790 184 SUPERFAMILY Translation proteins 2 97 IPR009000 -
Trre11g00790 184 FunFam Elongation factor 1-alpha 60 167 - -
Trre11g00790 184 Gene3D Translation factors 1 60 - -
Trre11g00790 184 PANTHER ELONGATION FACTOR 1 ALPHA 1 184 - -
Trre11g00790 184 Pfam Elongation factor Tu domain 2 7 50 IPR004161 GO:0005525
Trre11g00790 184 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 63 166 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00790 Trre-Chr11 6571276 6571830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00790 1 177 Eukaryotic Initiation Factors Gene Family AT5G60390 92.090 1.05e-118 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00790 K03231 - cave:132178364 337.421