Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00778 ATGACTTCCCTTTCATGGTTTCTCATTCTTTTTGCTCTTTCTCTTCTTATCCCAAATTTTGTTTCATCCTCTGCAGTTAAAGATCCTAAACAAGTTGTACAAGATGTTCAAAGGAGCATCAGGAATGCTACTAGGAGAAACTTGGGCTATTTATCTTGTGGAACAGGCAACCCAATTGATGATTGTTGGAGATGTGAACCAAATTGGGAAAACAATAGACAAAAACTAGCTGATTGTGCAATTGGATTTGGCAAAGATGCAATTGGTGGTAAAAATGGTAAAATCTATATTGTAACTGATTCAGGTGATGATGATCCAGTTAATCCAATGCCAGGAACATTAAGATATGGTGCAATTCAAGATGAACCATTATGGATTATTTTCAAAAGAGATATGGTAATTACATTAAAACAAGAGTTATTGGTAAATTCATATAAAACAATTGATGGAAGAGGTGCTAGTGTTCATATAGCAAATGGGGGGTGTATAACAATACATTATGTTAATAACATTATAATACATGGTATTAATGTTCATGATTGTGTTCCAACTGGGAACACTAATATTAGAAATTCACCTGAACATAGTGGATTTTGGACTGTTTCAGATGGTGATGGAATTTCAGTATTTAATTCACAACATATTTGGATTGATCATTGTTCTTTGTCTAATTGTCGTGATGGGCTTATTGATGTTATTCATGGATCTAATGCTATTACTATTTCAAATAACTACATGACTCATCATGATAAGGTCATGCTTTTGGGACATAGTGATTCTTATACACAAGATAAGGACATGCAGGTTACTATTGCTTTTAATCATTTTGGTGAAGGGCTTGTCCAAAGAATGCCAAGGTGTAGACATGGATATTTTCATGTGGTGAACAATGATTATACACATTGGGAAATGTATGCAATTGGAGGGAGTGCTAACCCTACAATCAACAGCCAAGGGAACAGATTCCTTGCACCAGACAATAGATTTAGCAAGGAAGTAACAAAGCATGAGGATGGATCAGAAAGTGAATATAATAATTGGAATTGGAGATCAGAAGGTGATTTGTTCTTGAATGGAGCATTCTTTAGACAAACTGGTGCTGAAGCTTCTTCTATCTATGCTAGAGCTTCAAGTCTTAGTGCAAGACCAGCTTCTCTTGTTGGTTCAATTACTACTACTTCTGGTGTGCTTAGTTGCAAGAAGGGCAACCTTTGCTAA 1218 0.3547 MTSLSWFLILFALSLLIPNFVSSSAVKDPKQVVQDVQRSIRNATRRNLGYLSCGTGNPIDDCWRCEPNWENNRQKLADCAIGFGKDAIGGKNGKIYIVTDSGDDDPVNPMPGTLRYGAIQDEPLWIIFKRDMVITLKQELLVNSYKTIDGRGASVHIANGGCITIHYVNNIIIHGINVHDCVPTGNTNIRNSPEHSGFWTVSDGDGISVFNSQHIWIDHCSLSNCRDGLIDVIHGSNAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDGSESEYNNWNWRSEGDLFLNGAFFRQTGAEASSIYARASSLSARPASLVGSITTTSGVLSCKKGNLC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00778 405 SMART amb_all 131 328 IPR002022 -
Trre11g00778 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Trre11g00778 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Trre11g00778 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Trre11g00778 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Trre11g00778 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Trre11g00778 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Trre11g00778 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Trre11g00778 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Trre11g00778 405 Pfam Pectate lyase 138 322 IPR002022 -
Trre11g00778 405 SUPERFAMILY Pectin lyase-like 57 396 IPR011050 -
Trre11g00778 405 PANTHER PECTATE LYASE 18-RELATED 24 403 IPR045032 GO:0030570
Trre11g00778 405 Gene3D - 56 398 IPR012334 -
Trre11g00778 405 FunFam Pectate lyase 56 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00778 Trre-Chr11 6482202 6484909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00778 7 405 Polysaccharide Lyase AT5G63180 71.144 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00778 K01728 - gmx:100810380 724.546