Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00756 ATGTTCACATCAAGGAAGAAAATCAGCAAGGATAAGGGTGCCGAGCCAACTGAATTTGAGGAATCAGTTGGACAGGCTTTGTTTGATCTAGAAAACACCAACCATGAGCTGAAAAGTGAGCTCAAAGATTTATACATAAATTCAGCAGTCCAAATCGATGTTTCTGGCAACCGTAAGGCTGTGCTTATCCAAGTCCCCTACAGATTAAGGAAGGGTTTCCGCAAAATTCATGTCAGGCTTGTTAGGGAGCTTGAGAAGAAATTTAGCGGCAAGGACGTAATCATTATTGCCACCAGGAGGATTGTTCGACCACCAAAGAAAGGTTCAGCTGCTCAGCGCCCCCGCAGCCGTACACTTACTGCTGTGCACGAAGCAATACTTGAGGATGTCGTATTACCTGCCGAGATTGTTGGCAAGCGCACTCGTTACCGAGTTGATGGATCAAAGATCATGAAGGTGTTTTTGGACCCAAAGGAGCGTAACTCAACCGAGTACAAGTTGGAGACATTTGCTGCAGTTTACAGGAAACTTTCAGGCAAAGATGTCGTGTTTGAGTATCCAATTACTGAGGCTTAG 576 0.4514 MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQIDVSGNRKAVLIQVPYRLRKGFRKIHVRLVRELEKKFSGKDVIIIATRRIVRPPKKGSAAQRPRSRTLTAVHEAILEDVVLPAEIVGKRTRYRVDGSKIMKVFLDPKERNSTEYKLETFAAVYRKLSGKDVVFEYPITEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00756 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre11g00756 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre11g00756 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre11g00756 191 Coils Coil 27 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00756 Trre-Chr11 6326755 6327902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00756 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 79.581 2.28e-115 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00756 K02993 - gmx:100527642 347.436