Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00749 ATGGGTCGTGGAAGAATATCTATGAAACTCATTCAAAAGGAGAAATCAAGAAGGACAACATTTCAAAAGAGAAAGAAAGGATTAATCAAAAAAGTGAATGAATTTTCCATTCTTTGTGGTGTTGATGTTTGTGTAATTCTCTACGCTCCCAATTTTGAAGGTCAGGGATATGCTGAACCAGAAATATGGCCTAAAGACAAAAAAGAGGTACACAGAATCCTTCAAAATTACTATAACACTACAATTGATAGGCGTCCTAAGATCTATGATATTCATGAGTATTACAAAGAAAGGGTGAAAAAAGTCGAATTTGAAATTTCCAAAGTGCGCAAAGAGATGTTCAAGATCATGTATCCAACATGGGATGAATCTTACAATTCTCTCGGAGAGGAACAAATGAGGTTATTTGCTGGCATATTGGATGCTAAGCTTGATGCTTGTAATCAAAAGATGAATATGCTAAAAGGTGATCTTAAGGGAAAAACAATAGCTCATGAATCAAACAAGGTTGATAAACCTAATAATGCCTATTTGACCTCAAATTCAAATAGCTACTTCAATCTCATGCAAAACATGTCTCAACCACAAATTTACCCTTCATTGATGAATATTAGTGATAAAACCCCCTTAGGGTTTTGGCCACTCCACTTCGGACAAAGCTCTCAACCTTCTTCAACGATTTCTAGTGCACAAGGTTCCTACCAGTTTGAGTCTGATGAGGGTAGATATGCACAGTCTTATCCCTGCAAGCAAGTCGATGCTAATTGGACTAATTGGACCAATCAGATTGATGCTAATATTTCCTATGATCCAAAAACAGGTACAAAAAAGAACAATGGAGCTGAAAATTATGAGAATTTTTCACCATATTATTACAATGGAAATGCAATGACAATGCAATCATATCCTATTGGTATGCATACTGTTCCTTTTCAGAATCTTCCAAACCTACCACCACATGGATATCAATTTAATGGATTCTATGATATGGATATTCATCAAGCTCATATGTTCAACAACTACATGGATGGAAGGAAGTAG 1041 0.3564 MGRGRISMKLIQKEKSRRTTFQKRKKGLIKKVNEFSILCGVDVCVILYAPNFEGQGYAEPEIWPKDKKEVHRILQNYYNTTIDRRPKIYDIHEYYKERVKKVEFEISKVRKEMFKIMYPTWDESYNSLGEEQMRLFAGILDAKLDACNQKMNMLKGDLKGKTIAHESNKVDKPNNAYLTSNSNSYFNLMQNMSQPQIYPSLMNISDKTPLGFWPLHFGQSSQPSSTISSAQGSYQFESDEGRYAQSYPCKQVDANWTNWTNQIDANISYDPKTGTKKNNGAENYENFSPYYYNGNAMTMQSYPIGMHTVPFQNLPNLPPHGYQFNGFYDMDIHQAHMFNNYMDGRK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00749 346 CDD MADS_SRF_like 2 77 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre11g00749 346 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre11g00749 346 PANTHER MADS BOX PROTEIN 3 133 - -
Trre11g00749 346 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre11g00749 346 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Trre11g00749 346 SUPERFAMILY SRF-like 2 99 IPR036879 GO:0003677|GO:0046983
Trre11g00749 346 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Trre11g00749 346 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre11g00749 346 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre11g00749 346 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00749 Trre-Chr11 6247087 6248127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00749 1 123 Type I MADS-box Gene Family AT5G55690 43.548 1.09e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre11g00749 SRF-TF 4.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00749 - - tpra:123913303 560.451