Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00723 ATGCGAATGAGTTGTAATGGTTGTAGAGTTTTAAGAAAAGGGTGTAGTGAAGATTGTAGCATAAGACCATGTTTGGAATGGATTAAGTGTCCTCAATCACAAGCTAATGCAACTCTTTTTCTTGCTAAGTTTTATGGTCGTGCTGGTCTCATCAATCTCATCAATTCTGCCTCTCAAAATCATCGTCCAGCAATTTTTCGATCATTGCTACATGAGGCTTGTGGGAGGATCGTGAACCCGGTTTACGGTTCAGTGGGTCTTCTATGGTCTGGTAGCTGGCAGCTCTGTCAAGCCGCTGTTGAAGCCGTGTTAAAAGGTGAGCCGATTACGCCAATAGCTTCGGAGGCTACACATGGCCCACCTTTCAAGGCATATGACATACGCCATGTGGCGAAAAATGATAACTTGGATGAGACTCAAAGGGTCAAGACTCGGTCTCGGTTCAAACGAGCCGTGAAGCCAAAGCCAAGTATGGAAAATGGTTCAGTTGAAGAGGCGAACCAGCTGTCTGAATCATTGCTTAGCCAACCGGGCAAAGATAGTGAGAGTGGGGTTTCGGTGGAAACTTCGATTCTTTTTCATGATGAACCGGAGTCGAAAGCTAAGATAAGTGGTCAAGCCGAGGATGGTGTGAGTAATGAGGTTGGTTTGGAGCTTAGGCTTGGGTTCGAACCCATTGATTCGCGTGAGCCATGTGAGGTGCACGTGGTTCCCATAAAGAAGAGAAAATTTGATTTGAAGGATCATAATGTTTCTTATAAAGTGGAGCTTGGGCTTGAGTTTGCGGCTTAA 792 0.4533 MRMSCNGCRVLRKGCSEDCSIRPCLEWIKCPQSQANATLFLAKFYGRAGLINLINSASQNHRPAIFRSLLHEACGRIVNPVYGSVGLLWSGSWQLCQAAVEAVLKGEPITPIASEATHGPPFKAYDIRHVAKNDNLDETQRVKTRSRFKRAVKPKPSMENGSVEEANQLSESLLSQPGKDSESGVSVETSILFHDEPESKAKISGQAEDGVSNEVGLELRLGFEPIDSREPCEVHVVPIKKRKFDLKDHNVSYKVELGLEFAA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00723 263 PIRSF AS2 135 263 IPR017414 -
Trre11g00723 263 PIRSF AS2 1 160 IPR017414 -
Trre11g00723 263 MobiDBLite consensus disorder prediction 161 186 - -
Trre11g00723 263 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 220 - -
Trre11g00723 263 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Trre11g00723 263 MobiDBLite consensus disorder prediction 147 186 - -
Trre11g00723 263 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00723 Trre-Chr11 6043392 6044835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00723 1 246 AS2 family AT3G02550 52.273 2.99e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre11g00723 LOB 5.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00723 - - aprc:113867933 332.798