Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00696 ATGCAGCCTTGCAGCAGAGAAATGCAATCCCTCTTCAACTCTTCTTCCCAAATTCCCATCCCTCTTCAAAATCACTCACATATCCAAATCAACAACAACAACAATGATGCATTCCATAACGACGATTTCCTCAAGCAAATGCTCTCCAATCTCCCTCCATCCTCTCCTTGGACTCTTGTTCCTAATTCAGACGAAAATCTCACTTTCCCTAATTACGATCAACAACACAACAACCTTTCCTCCAAGTTTCCTAACCACCACATCACTCACAAGTCCGCCGCCGTCACCTTTCTTCAAATGCCTGCTGACTTTGACTCCTCTCAAAACGATGTTGCTAACACTTCCTCCGCTGATGACGCTTCCGTTCAAGCTCTCTTTAACGGTTTTTCCGGATCTCTCAACGGTGTCGCCGCCAATCAAACTCACCATTTTCAACCTCCTCAGGGACAAAGTTTTGGAGATGGCTCAGTGGGTGCGACGAACCAGGCTCCGGCGAGTGGTGCTCCGGTACAGCCAAGGCAGAAAGTCAGGGCTAGGAGAGGTCAAGCAACCGACCCACACAGCATTGCTGAGAGGATGCGGAGAGAAAGAATTGCGGAGAGAATGAAAGCATTGCAGGAACTTGTTCCTAATGCCAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGATTATATGAAGTTCCTACAGGTTCAAGTCAAAGTTTTGAGCATGAGCAGATTAGGTGGAGCAGCAGTTGTAGCTCCCCTTGTTGCTGATATGTCCTCCGAGGGTGTAAGTGACTGCGTCGAAGTCAACGGCGACAGTGGGGTCCACCTGAGAAACCCAAAAATGGTGTCGTCTTCGAACAAAAGCCTCACAATGACAGAGCATCAGGTGGCAAAGCTGATGGAAGAAGACATGGGATCCGCCATGCAATACTTGCAAGGCAAAGGTCTGTGCCTCATGCCTATTTCTCTTGCAACTGCAATCTCTACAGCCACGTGTCACACCAGGAACCCTTTGATCAATGCTGCCAATAACAATGCCAACAACGGTAATGGGAACCATGTCGTTGCATCTAACGGTGATGGGCCATCCTCTCCTGGAATGTCCGTTAATAGCATCGTCAAAGATGCTAACTCCGCTTCTAAGTCGTAG 1146 0.4834 MQPCSREMQSLFNSSSQIPIPLQNHSHIQINNNNNDAFHNDDFLKQMLSNLPPSSPWTLVPNSDENLTFPNYDQQHNNLSSKFPNHHITHKSAAVTFLQMPADFDSSQNDVANTSSADDASVQALFNGFSGSLNGVAANQTHHFQPPQGQSFGDGSVGATNQAPASGAPVQPRQKVRARRGQATDPHSIAERMRRERIAERMKALQELVPNANKTDKASMLDEIIDYMKFLQVQVKVLSMSRLGGAAVVAPLVADMSSEGVSDCVEVNGDSGVHLRNPKMVSSSNKSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINAANNNANNGNGNHVVASNGDGPSSPGMSVNSIVKDANSASKS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00696 381 Gene3D - 177 239 IPR036638 GO:0046983
Trre11g00696 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Trre11g00696 381 SMART finulus 188 237 IPR011598 GO:0046983
Trre11g00696 381 MobiDBLite consensus disorder prediction 349 381 - -
Trre11g00696 381 Pfam Helix-loop-helix DNA-binding domain 187 232 IPR011598 GO:0046983
Trre11g00696 381 MobiDBLite consensus disorder prediction 139 168 - -
Trre11g00696 381 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 326 - -
Trre11g00696 381 MobiDBLite consensus disorder prediction 139 187 - -
Trre11g00696 381 FunFam Transcription factor bHLH66 179 244 - -
Trre11g00696 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 242 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00696 Trre-Chr11 5750242 5757664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00696 168 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 67.633 1.37e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g00696 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00696 - - psat:127138414 525.783